POPTR_0003s16150 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s16150 T278250_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.901 0.978
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.901 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s16150.1 Myb 42 109
POPTR_0003s16150.2 Myb 42 109

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KAFR_0B03230 Kazachstania africana KAFR_0B03230 N
KLTH0D12452g Kluyveromyces thermotolerans KLTH0D12452g N
KLTH0D12452g Lachancea thermotolerans KLTH0D12452g N
NCAS_0C01050 Naumovozyma castellii NCAS_0C01050 N
NDAI_0K01050 Naumovozyma dairenensis NDAI_0K01050 N
19101_YMR213W Saccharomyces bayanus 19101_YMR213W N
17212_YMR213W Saccharomyces mikatae 17212_YMR213W N
16480_YMR213W Saccharomyces paradoxus 16480_YMR213W N
TPHA_0G01400 Tetrapisispora phaffii TPHA_0G01400 N
TDEL_0B03810 Torulaspora delbrueckii TDEL_0B03810 N
ZBAI_00661 Zygosaccharomyces bailii ZBAI_00661 N
ZBAI_05956 Zygosaccharomyces bailii ZBAI_05956 N
ZYRO0F09526g Zygosaccharomyces rouxii ZYRO0F09526g N