POPTR_0005s14490 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0005s14490 T278286_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB113
M07026_2.00 		Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB		 Dap-seq
OMalley et al.(2016)
MYB113_col_a 		0.664 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s14490.1 Myb 9 56
POPTR_0005s14490.1 Myb 62 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.679
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.675
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.675
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.670
MYB113 Arabidopsis thaliana AT1G66370 D 0.664
MYB114 Arabidopsis thaliana AT1G66380 I 0.675
MYB90 Arabidopsis thaliana AT1G66390 I 0.675
MYB75 Arabidopsis thaliana AT1G56650 I 0.675
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.678
Bo00835s060 Brassica oleracea Bo00835s060 I 0.665
Bo6g099880 Brassica oleracea Bo6g099880 I 0.675
Bo6g100940 Brassica oleracea Bo6g100940 I 0.678
Bra001917 Brassica rapa Bra001917 I 0.665
Bra004162 Brassica rapa Bra004162 I 0.675
Bra039763 Brassica rapa Bra039763 I 0.665
PK05760.1 Cannabis sativa PK05760.1 I 0.685
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.675
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.681
Eucgr.J01578 Eucalyptus grandis Eucgr.J01578 I 0.661
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.683
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.675
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.697
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.697
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.687
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.725
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.725
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.687
mgf019317m Mimulus guttatus mgf019317m I 0.679
POPTR_0005s14450 Populus trichocarpa POPTR_0005s14450 I 0.797
POPTR_0005s14480 Populus trichocarpa POPTR_0005s14480 I 0.841
POPTR_0005s14460 Populus trichocarpa POPTR_0005s14460 I 0.846
POPTR_0005s14470 Populus trichocarpa POPTR_0005s14470 I 0.846
Pm029445 Prunus mume Pm029445 I 0.668
30128.m008730 Ricinus communis 30128.m008730 I 0.679
SapurV1A.0230s0240 Salix purpurea SapurV1A.0230s0240 I 0.754
SapurV1A.0230s0250 Salix purpurea SapurV1A.0230s0250 I 0.777
SapurV1A.0230s0260 Salix purpurea SapurV1A.0230s0260 I 0.817
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.690
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.685
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.667
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.681
TCM_019192 Theobroma cacao TCM_019192 I 0.701
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.667
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.680