Cla018782 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla018782 T283297_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.796 0.817
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.796 0.817
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.760 0.806
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.760 0.806
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.749 0.774
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.687 0.710
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.687 0.710
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.687 0.710
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.682 0.742
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.661 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018782 Myb 28 75
Cla018782 Myb 81 126

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

443 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I 0.000
Carubv10009451m.g Capsella rubella Carubv10009451m.g I 0.000
evm.TU.supercontig_3.170 Carica papaya evm.TU.supercontig_3.170 N 0.000
Ca_27204 Cicer arietinum Ca_27204 I 0.000
Eucgr.G01550 Eucalyptus grandis Eucgr.G01550 N 0.000
Eucgr.G01548 Eucalyptus grandis Eucgr.G01548 N 0.000
Eucgr.G01067 Eucalyptus grandis Eucgr.G01067 N 0.000
Eucgr.G01066 Eucalyptus grandis Eucgr.G01066 N 0.000
Eucgr.G01060 Eucalyptus grandis Eucgr.G01060 N 0.000
GLYMA14G36840 Glycine max GLYMA14G36840 I 0.000
Lus10032919.g Linum usitatissimum Lus10032919.g I 0.000
Lus10015587.g Linum usitatissimum Lus10015587.g I 0.000
MTR_5g069030 Medicago truncatula MTR_5g069030 I 0.000
mgf022344m Mimulus guttatus mgf022344m I 0.000
POPTR_0014s10360 Populus trichocarpa POPTR_0014s10360 I 0.000
POPTR_0014s10350 Populus trichocarpa POPTR_0014s10350 I 0.000
POPTR_0014s10330 Populus trichocarpa POPTR_0014s10330 I 0.000
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I 0.000
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I 0.000
POPTR_0002s15560 Populus trichocarpa POPTR_0002s15560 I 0.000
Pm019659 Prunus mume Pm019659 I 0.000
PRUPE_ppa023197mg Prunus persica PRUPE_ppa023197mg N 0.000
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I 0.000
SapurV1A.0162s0450 Salix purpurea SapurV1A.0162s0450 I 0.000
SapurV1A.0321s0340 Salix purpurea SapurV1A.0321s0340 I 0.000
SapurV1A.0321s0350 Salix purpurea SapurV1A.0321s0350 I 0.000
SapurV1A.0321s0360 Salix purpurea SapurV1A.0321s0360 I 0.000
Solyc06g073050.2 Solanum lycopersicum Solyc06g073050.2 N 0.000
Solyc03g080090.2 Solanum lycopersicum Solyc03g080090.2 I 0.000
PGSC0003DMG400000555 Solanum tuberosum PGSC0003DMG400000555 I 0.000