cassava23010.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava23010.valid.m1 T284087_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.909 0.979
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.898 0.979
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.891 0.957
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.870 0.894
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.860 0.872
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.835 0.894
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.835 0.894
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.835 0.894
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.832 0.894
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.832 0.894
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.832 0.894
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.811 0.894
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.811 0.872
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.806 0.809
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.806 0.809
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.789 0.936
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.789 0.936
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.789 0.936
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.781 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.781 0.830
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.740 0.681
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.740 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava23010.valid.m1 Myb 75 122

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

602 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04344 Aegilops tauschii F775_04344 I
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I
scaffold_501386.1 Arabidopsis lyrata scaffold_501386.1 I
IDD9 Arabidopsis thaliana AT3G45260 D
JKD Arabidopsis thaliana AT5G03150 D
Bostr.18473s0395 Boechera stricta Bostr.18473s0395 I
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I
BRADI3G26910 Brachypodium distachyon BRADI3G26910 N
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I
Bo1g065210 Brassica oleracea Bo1g065210 I
Bo2g003880 Brassica oleracea Bo2g003880 I
Bo2g100660 Brassica oleracea Bo2g100660 I
Bo2g167740 Brassica oleracea Bo2g167740 I
Bo3g129830 Brassica oleracea Bo3g129830 I
Bo9g021710 Brassica oleracea Bo9g021710 I
Bo9g183170 Brassica oleracea Bo9g183170 I
Bra005741 Brassica rapa Bra005741 I
Bra009549 Brassica rapa Bra009549 I
Bra018535 Brassica rapa Bra018535 I
Bra033840 Brassica rapa Bra033840 I
Bra038293 Brassica rapa Bra038293 I
PK06347.1 Cannabis sativa PK06347.1 I
PK18288.1 Cannabis sativa PK18288.1 I
PK25985.1 Cannabis sativa PK25985.1 I
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I
Cagra.28200s0002 Capsella grandiflora Cagra.28200s0002 I
Carubv10000736m.g Capsella rubella Carubv10000736m.g I
Carubv10001008m.g Capsella rubella Carubv10001008m.g I
Carubv10017213m.g Capsella rubella Carubv10017213m.g I
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I
evm.TU.supercontig_48.75 Carica papaya evm.TU.supercontig_48.75 I
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I
Ca_07799 Cicer arietinum Ca_07799 I
Ca_14587 Cicer arietinum Ca_14587 I
Ca_17124 Cicer arietinum Ca_17124 I
Cla005124 Citrullus lanatus Cla005124 I
Cla015029 Citrullus lanatus Cla015029 I
Cla018101 Citrullus lanatus Cla018101 I
Cla018558 Citrullus lanatus Cla018558 I
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I
Cucsa.084240 Cucumis sativus Cucsa.084240 I
Cucsa.181990 Cucumis sativus Cucsa.181990 I
Cucsa.222420 Cucumis sativus Cucsa.222420 I
Cucsa.306990 Cucumis sativus Cucsa.306990 I
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I
Eucgr.B02487 Eucalyptus grandis Eucgr.B02487 I
Eucgr.B03566 Eucalyptus grandis Eucgr.B03566 I
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I
Thhalv10002526m.g Eutrema salsugineum Thhalv10002526m.g I
Thhalv10003218m.g Eutrema salsugineum Thhalv10003218m.g I
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I
Thhalv10016023m.g Eutrema salsugineum Thhalv10016023m.g I
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I
GLYMA03G31390 Glycine max GLYMA03G31390 I
GLYMA10G03541 Glycine max GLYMA10G03541 I
GLYMA10G05880 Glycine max GLYMA10G05880 I
GLYMA11G15950 Glycine max GLYMA11G15950 I
GLYMA12G07510 Glycine max GLYMA12G07510 I
GLYMA13G20231 Glycine max GLYMA13G20231 I
GLYMA19G34220 Glycine max GLYMA19G34220 I
GLYMA19G36430 Glycine max GLYMA19G36430 I
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I
LPERR01G17290 Leersia perrieri LPERR01G17290 I
LPERR02G14730 Leersia perrieri LPERR02G14730 I
Lus10007409.g Linum usitatissimum Lus10007409.g I
Lus10019927.g Linum usitatissimum Lus10019927.g I
Lus10026497.g Linum usitatissimum Lus10026497.g I
Lus10036116.g Linum usitatissimum Lus10036116.g I
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I
MDP0000122321 Malus domestica MDP0000122321 I
MDP0000233477 Malus domestica MDP0000233477 I
MDP0000243664 Malus domestica MDP0000243664 I
MDP0000319344 Malus domestica MDP0000319344 I
MDP0000480293 Malus domestica MDP0000480293 I
MDP0000688613 Malus domestica MDP0000688613 I
MDP0000826293 Malus domestica MDP0000826293 I
cassava20187.m1 Manihot esculenta cassava20187.m1 I
cassava20362.m1 Manihot esculenta cassava20362.m1 I
cassava21529.m1 Manihot esculenta cassava21529.m1 I
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I
cassava26767.m1 Manihot esculenta cassava26767.m1 I
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I
MTR_4g059870 Medicago truncatula MTR_4g059870 I
mgf001929m Mimulus guttatus mgf001929m I
mgf003691m Mimulus guttatus mgf003691m I
mgf008439m Mimulus guttatus mgf008439m I
mgf017113m Mimulus guttatus mgf017113m I
mgf018401m Mimulus guttatus mgf018401m I
mgf023281m Mimulus guttatus mgf023281m I
GSMUA_Achr2G08910_001 Musa acuminata GSMUA_Achr2G08910_001 I
OBART01G06050 Oryza barthii OBART01G06050 I
OBART01G20150 Oryza barthii OBART01G20150 I
OBART02G18320 Oryza barthii OBART02G18320 I
OB01G16060 Oryza brachyantha OB01G16060 I
OB01G29940 Oryza brachyantha OB01G29940 I
OB02G26130 Oryza brachyantha OB02G26130 I
ORGLA01G0057600 Oryza glaberrima ORGLA01G0057600 I
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I
OGLUM01G06620 Oryza glumaepatula OGLUM01G06620 I
OGLUM01G23770 Oryza glumaepatula OGLUM01G23770 I
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I
BGIOSGA002939 Oryza indica BGIOSGA002939 I
BGIOSGA003803 Oryza indica BGIOSGA003803 I
BGIOSGA006371 Oryza indica BGIOSGA006371 I
OLONG_013811 Oryza longistaminata OLONG_013811 I
OMERI01G06230 Oryza meridionalis OMERI01G06230 I
OMERI01G18610 Oryza meridionalis OMERI01G18610 I
OMERI02G18510 Oryza meridionalis OMERI02G18510 I
OMERI10G07530 Oryza meridionalis OMERI10G07530 I
ONIVA01G22710 Oryza nivara ONIVA01G22710 I
ONIVA02G20290 Oryza nivara ONIVA02G20290 I
OPUNC01G05880 Oryza punctata OPUNC01G05880 I
OPUNC01G20510 Oryza punctata OPUNC01G20510 I
OPUNC02G16560 Oryza punctata OPUNC02G16560 I
ORUFI01G22710 Oryza rufipogon ORUFI01G22710 I
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I
OS01G0195000 Oryza sativa OS01G0195000 I
OS01G0572300 Oryza sativa OS01G0572300 I
OS02G0518500 Oryza sativa OS02G0518500 I
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I
Pavir.Ea01893 Panicum virgatum Pavir.Ea01893 I
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I
POPTR_0327s00220 Populus trichocarpa POPTR_0327s00220 I
Pm001002 Prunus mume Pm001002 I
Pm020252 Prunus mume Pm020252 I
Pm030100 Prunus mume Pm030100 I
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I
29643.m000323 Ricinus communis 29643.m000323 I
29883.m001956 Ricinus communis 29883.m001956 I
30078.m002347 Ricinus communis 30078.m002347 I
30128.m008580 Ricinus communis 30128.m008580 I
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I
SapurV1A.1019s0030 Salix purpurea SapurV1A.1019s0030 I
SapurV1A.2164s0010 Salix purpurea SapurV1A.2164s0010 I
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I
Si001287m.g Setaria italica Si001287m.g I
Si001504m.g Setaria italica Si001504m.g I
Si019690m.g Setaria italica Si019690m.g I
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I
Solyc04g080130.2 Solanum lycopersicum Solyc04g080130.2 I
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I
PGSC0003DMG400005147 Solanum tuberosum PGSC0003DMG400005147 I
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I
Sb03g025790 Sorghum bicolor Sb03g025790 I
Sb04g021440 Sorghum bicolor Sb04g021440 I
TCM_004271 Theobroma cacao TCM_004271 I
TCM_008261 Theobroma cacao TCM_008261 I
TCM_022127 Theobroma cacao TCM_022127 I
TCM_041053 Theobroma cacao TCM_041053 I
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I
TRIUR3_32694 Triticum urartu TRIUR3_32694 I
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I
JKD Vitis vinifera VIT_08s0040g02100 I
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I
GRMZM2G027333 Zea mays GRMZM2G027333 I
GRMZM2G177693 Zea mays GRMZM2G177693 I
GRMZM2G320287 Zea mays GRMZM2G320287 I