cassava44087.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava44087.valid.m1 T284291_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 0.989
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 0.989
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava44087.valid.m1 Myb 7 53
cassava44087.valid.m1 Myb 59 103

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02052 Aegilops tauschii F775_02052 I 0.000
F775_22967 Aegilops tauschii F775_22967 I 0.000
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.000
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.000
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.000
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.000
LBD14 Arabidopsis thaliana AT2G31310 N 0.000
LBD29 Arabidopsis thaliana AT3G58190 I 0.000
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.000
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.000
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.000
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.000
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.000
Bo4g108600 Brassica oleracea Bo4g108600 I 0.000
Bo4g191540 Brassica oleracea Bo4g191540 N 0.000
Bo8g092560 Brassica oleracea Bo8g092560 I 0.000
Bra007385 Brassica rapa Bra007385 N 0.000
Bra014581 Brassica rapa Bra014581 I 0.000
Bra016876 Brassica rapa Bra016876 N 0.000
Bra021737 Brassica rapa Bra021737 N 0.000
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.000
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.000
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.000
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.000
Ca_07763 Cicer arietinum Ca_07763 I 0.000
Ca_12214 Cicer arietinum Ca_12214 I 0.000
Cla006087 Citrullus lanatus Cla006087 I 0.000
Cla006088 Citrullus lanatus Cla006088 I 0.000
Cla015094 Citrullus lanatus Cla015094 I 0.000
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.000
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.000
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.000
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.000
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.000
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.000
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.000
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.000
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.000
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.000
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.000
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.000
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.000
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.000
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.000
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.000
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.000
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.000
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.000
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.000
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.000
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.000
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.000
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.000
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.000
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.000
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.000
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.000
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.000
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.000
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.000
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.000
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.000
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.000
mgf020773m Mimulus guttatus mgf020773m I 0.000
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.000
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.000
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.000
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.000
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.000
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.000
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.000
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.000
OBART03G03830 Oryza barthii OBART03G03830 I 0.000
OBART08G23860 Oryza barthii OBART08G23860 I 0.000
OB02G44330 Oryza brachyantha OB02G44330 I 0.000
OB03G13890 Oryza brachyantha OB03G13890 I 0.000
OB08G30680 Oryza brachyantha OB08G30680 I 0.000
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.000
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.000
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.000
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.000
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.000
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.000
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.000
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.000
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.000
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.000
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.000
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.000
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.000
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.000
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.000
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.000
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.000
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.000
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.000
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.000
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.000
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.000
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.000
OS02G0820500 Oryza sativa OS02G0820500 I 0.000
OS03G0149100 Oryza sativa OS03G0149100 I 0.000
OS08G0563400 Oryza sativa OS08G0563400 I 0.000
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.000
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.000
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.000
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.000
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.000
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.000
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.000
Pm020627 Prunus mume Pm020627 I 0.000
Pm020628 Prunus mume Pm020628 I 0.000
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.000
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.000
28428.m000040 Ricinus communis 28428.m000040 I 0.000
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.000
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.000
Si015156m.g Setaria italica Si015156m.g I 0.000
Si019578m.g Setaria italica Si019578m.g I 0.000
Si040019m.g Setaria italica Si040019m.g I 0.000
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.000
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.000
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.000
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.000
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.000
TCM_004103 Theobroma cacao TCM_004103 I 0.000
TCM_042730 Theobroma cacao TCM_042730 I 0.000
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.000
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.000
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.000
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.000
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.000
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.000
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.000
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.000
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.000
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.000
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.000
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.000
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.000