Cagra.0551s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0551s0003 T285972_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.681 0.794
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0551s0003.1.p Myb 14 61
Cagra.0551s0003.1.p Myb 67 87

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10024801m.g Capsella rubella Carubv10024801m.g I 0.667
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I 0.672
Cla015485 Citrullus lanatus Cla015485 N 0.680
Lus10000008.g Linum usitatissimum Lus10000008.g N 0.694
LjSGA_102038.1 Lotus japonicus LjSGA_102038.1 I 0.682
CM0385.290.nd Lotus japonicus CM0385.290.nd I 0.693
cassava34998.m1 Manihot esculenta cassava34998.m1 I 0.757
mgf024704m Mimulus guttatus mgf024704m N 0.667
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.679
OLONG_002280 Oryza longistaminata OLONG_002280 I 0.710
Pavir.Ia03542 Panicum virgatum Pavir.Ia03542 I 0.751
PDK_20s1587411g001 Phoenix dactylifera PDK_20s1587411g001 N 0.668
29889.m003258 Ricinus communis 29889.m003258 I 0.665
SELMODRAFT_39516 Selaginella moellendorffii SELMODRAFT_39516 N 0.666
SELMODRAFT_39507 Selaginella moellendorffii SELMODRAFT_39507 N 0.666
SELMODRAFT_39481 Selaginella moellendorffii SELMODRAFT_39481 I 0.675
SELMODRAFT_39454 Selaginella moellendorffii SELMODRAFT_39454 I 0.675
MYBP_MAIZE Zea mays MYBP_MAIZE D 0.681
GRMZM2G129872 Zea mays GRMZM2G129872 I 0.736
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.683
GRMZM2G016020 Zea mays GRMZM2G016020 I 0.736