Carubv10004540m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10004540m.g T286245_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
APRR2
M02300_2.00 		Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN		 PBM
Weirauch et al.(2014)
pTH7102 		0.808 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004540m Myb 298 348

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.824
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.744
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.808
APRR2 Arabidopsis thaliana AT4G18020 D 0.808
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.774
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.668
Bo1g019180 Brassica oleracea Bo1g019180 I 0.774
Bo7g105690 Brassica oleracea Bo7g105690 I 0.774
Bra012623 Brassica rapa Bra012623 I 0.774
Bra013277 Brassica rapa Bra013277 I 0.774
Bra013278 Brassica rapa Bra013278 I 0.774
Bra013279 Brassica rapa Bra013279 I 0.774
Bra036015 Brassica rapa Bra036015 I 0.670
PK19826.1 Cannabis sativa PK19826.1 I 0.801
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.909
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.741
Ca_02285 Cicer arietinum Ca_02285 I 0.890
Ca_12825 Cicer arietinum Ca_12825 I 0.882
Ca_24009 Cicer arietinum Ca_24009 I 0.823
Cla008926 Citrullus lanatus Cla008926 I 0.768
Cla016403 Citrullus lanatus Cla016403 I 0.817
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.801
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.801
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.803
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.768
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.793
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.774
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.801
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.872
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.890
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.842
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.872
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.890
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.851
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.856
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.668
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.729
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.749
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.695
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.872
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.882
MDP0000237396 Malus domestica MDP0000237396 I 0.787
MDP0000248863 Malus domestica MDP0000248863 I 0.738
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.864
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.864
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.749
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.856
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.889
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.668
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.771
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.688
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.808
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.668
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.668
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.668
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.668
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.668
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.668
GLK2 Oryza sativa OS01G0239000 I 0.668
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.734
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.699
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.705
Pm014733 Prunus mume Pm014733 I 0.801
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.801
30054.m000786 Ricinus communis 30054.m000786 I 0.790
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.723
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.741
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.705
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.882
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.817
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.817
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.882
TCM_015780 Theobroma cacao TCM_015780 I 0.752
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.755