Carubv10018791m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10018791m.g T286382_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB23
M07133_2.00 		Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD		 Dap-seq
OMalley et al.(2016)
MYB23_col_a 		0.755 0.903
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.742 0.903
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.742 0.903
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018791m Myb 16 63
Carubv10018791m Myb 69 114

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra010591 Brassica rapa Bra010591 I 0.000
Eucgr.I00906 Eucalyptus grandis Eucgr.I00906 I 0.000
Thhalv10017520m.g Eutrema salsugineum Thhalv10017520m.g N 0.000
GLYMA03G32747 Glycine max GLYMA03G32747 I 0.000
GLYMA06G22790 Glycine max GLYMA06G22790 N 0.000
GLYMA02G00981 Glycine max GLYMA02G00981 N 0.000
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.000
MLOC_10815 Hordeum vulgare MLOC_10815 I 0.000
MLOC_49032 Hordeum vulgare MLOC_49032 N 0.000
MLOC_77331 Hordeum vulgare MLOC_77331 I 0.000
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.000
OBART06G04330 Oryza barthii OBART06G04330 I 0.000
OB03G34880 Oryza brachyantha OB03G34880 N 0.000
OB06G13990 Oryza brachyantha OB06G13990 I 0.000
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.000
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.000
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.000
OLONG_024366 Oryza longistaminata OLONG_024366 N 0.000
OLONG_008764 Oryza longistaminata OLONG_008764 N 0.000
OLONG_014962 Oryza longistaminata OLONG_014962 I 0.000
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.000
OMERI10G14830 Oryza meridionalis OMERI10G14830 N 0.000
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.000
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.000
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.000
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.000
PGSC0003DMG400024523 Solanum tuberosum PGSC0003DMG400024523 N 0.000
Sb01g029220 Sorghum bicolor Sb01g029220 N 0.000
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.000
Traes_5AL_85F3BE385 Triticum aestivum Traes_5AL_85F3BE385 N 0.000
Traes_7DS_0536E73E5 Triticum aestivum Traes_7DS_0536E73E5 I 0.000
Traes_7BS_F67ED5C9E Triticum aestivum Traes_7BS_F67ED5C9E I 0.000
Traes_6DL_C8198CD4A Triticum aestivum Traes_6DL_C8198CD4A N 0.000
Traes_6AL_842E10085 Triticum aestivum Traes_6AL_842E10085 N 0.000
Traes_5DL_C6C077BB9 Triticum aestivum Traes_5DL_C6C077BB9 N 0.000
GRMZM2G030744 Zea mays GRMZM2G030744 I 0.000
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.000