Carubv10026895m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026895m.g T286456_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.825 0.936
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.665 0.681
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.665 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026895m Myb 139 189

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01655 Acanthocheilonema viteae nAv.1.0.1.g01655 I 0.000
PNRLIKE Aedes aegypti AAEL008043 I 0.000
AALB002684 Anopheles albimanus AALB002684 I 0.000
AARA001809 Anopheles arabiensis AARA001809 I 0.000
AATE006105 Anopheles atroparvus AATE006105 I 0.000
ACOM033973 Anopheles coluzzii ACOM033973 I 0.000
ACUA020513 Anopheles culicifacies ACUA020513 I 0.000
ADIR010552 Anopheles dirus ADIR010552 I 0.000
AEPI001141 Anopheles epiroticus AEPI001141 I 0.000
AFAF018414 Anopheles farauti AFAF018414 I 0.000
AFUN001116 Anopheles funestus AFUN001116 I 0.000
AGAP001348 Anopheles gambiae AGAP001348 I 0.000
AMAM020935 Anopheles maculatus AMAM020935 I 0.000
AMEC010971 Anopheles melas AMEC010971 I 0.000
AMEM007574 Anopheles merus AMEM007574 I 0.000
AMIN000538 Anopheles minimus AMIN000538 I 0.000
AQUA006534 Anopheles quadriannulatus AQUA006534 I 0.000
ASIS017452 Anopheles sinensis ASIS017452 I 0.000
ASTEI07503 Anopheles stephensi ASTEI07503 I 0.000
GB52015 Apis mellifera GB52015 I 0.000
ALUE_0000688601 Ascaris lumbricoides ALUE_0000688601 I 0.000
ASU_00538 Ascaris suum ASU_00538 I 0.000
BGLB009763 Biomphalaria glabrata BGLB009763 I 0.000
BGIBMGA000670 Bombyx mori BGIBMGA000670 I 0.000
e_gw.333.48.1 Branchiostoma floridae e_gw.333.48.1 I 0.000
BXY_0757200 Bursaphelenchus xylophilus BXY_0757200 I 0.000
CBN10913 Caenorhabditis brenneri CBN10913 I 0.000
CBG16821 Caenorhabditis briggsae CBG16821 I 0.000
nhr-236 Caenorhabditis elegans WBGene00021417 I 0.000
Cflo_11610--XP_624042.1_APIME Camponotus floridanus Cflo_11610--XP_624042.1_APIME I 0.000
CapteG53417 Capitella teleta CapteG53417 I 0.000
CLEC008419 Cimex lectularius CLEC008419 I 0.000
CGI_10027671 Crassostrea gigas CGI_10027671 I 0.000
CpipJ_CPIJ017884 Culex pipiens CpipJ_CPIJ017884 I 0.000
CPIJ017884 Culex quinquefasciatus CPIJ017884 I 0.000
KGM_02557 Danaus plexippus KGM_02557 I 0.000
DAPPUDRAFT_116667 Daphnia pulex DAPPUDRAFT_116667 I 0.000
YQE_08225 Dendroctonus ponderosae YQE_08225 I 0.000
nDi.2.2.2.g01137 Dirofilaria immitis nDi.2.2.2.g01137 I 0.000
DME_0000705401 Dracunculus medinensis DME_0000705401 I 0.000
GPLIN_000097300 Globodera pallida GPLIN_000097300 I 0.000
Hsal_03554--XP_624042.1_APIME Harpegnathos saltator Hsal_03554--XP_624042.1_APIME I 0.000
HMEL013397 Heliconius melpomene HMEL013397 I 0.000
HelroG190681 Helobdella robusta HelroG190681 I 0.000
HelroG148449 Helobdella robusta HelroG148449 I 0.000
Hba_13386 Heterorhabditis bacteriophora Hba_13386 I 0.000
XP_002156561.1 Hydra magnipapillata XP_002156561.1 I 0.000
ISCW009256 Ixodes scapularis ISCW009256 I 0.000
LDEC002297 Leptinotarsa decemlineata LDEC002297 I 0.000
LotgiG120392 Lottia gigantea LotgiG120392 I 0.000
augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1 N 0.000
MhA1_Contig1097.frz3.gene5 Meloidogyne hapla MhA1_Contig1097.frz3.gene5 N 0.000
Minc02801 Meloidogyne incognita Minc02801 N 0.000
NV17364 Nasonia vitripennis NV17364 I 0.000
NEMVEDRAFT_v1g132075 Nematostella vectensis NEMVEDRAFT_v1g132075 I 0.000
NEMVEDRAFT_v1g99425 Nematostella vectensis NEMVEDRAFT_v1g99425 I 0.000
Ocbimv22038770m.g Octopus bimaculoides Ocbimv22038770m.g I 0.000
PHUM494010 Pediculus humanus PHUM494010 I 0.000
scaffold431-EXSNAP2012.16 Pristionchus exspectatus scaffold431-EXSNAP2012.16 I 0.000
PPA06908 Pristionchus pacificus PPA06908 I 0.000
PXEA_0002767701 Protopolystoma xenopodis PXEA_0002767701 I 0.000
RPRC009755 Rhodnius prolixus RPRC009755 I 0.000
Sakowv30030751m.g Saccoglossus kowalevskii Sakowv30030751m.g I 0.000
SMU15038277 Schmidtea mediterranea SMU15038277 I 0.000
SINV14755 Solenopsis invicta SINV14755 I 0.000
SMAR005242 Strigamia maritima SMAR005242 I 0.000
SPU_017375 Strongylocentrotus purpuratus SPU_017375 I 0.000
tetur03g02550 Tetranychus urticae tetur03g02550 I 0.000
TCNE_0001744001 Toxocara canis TCNE_0001744001 I 0.000
TC030676 Tribolium castaneum TC030676 I 0.000
D917_07429 Trichinella nativa D917_07429 I 0.000
EFV59394 Trichinella spiralis EFV59394 I 0.000
TMUE_s0002021300 Trichuris muris TMUE_s0002021300 I 0.000
D918_08129 Trichuris suis D918_08129 I 0.000
TTRE_0000264801 Trichuris trichiura TTRE_0000264801 I 0.000
L798_02901 Zootermopsis nevadensis L798_02901 I 0.000