Lus10032764.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10032764.g T288147_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.727 0.796
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.727 0.785
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.727 0.785
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.723 0.796
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.716 0.785
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.716 0.785
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.716 0.785
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.705 0.785
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.674 0.774
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.674 0.774
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.674 0.774
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.674 0.774
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.674 0.774
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.666 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10032764 Myb 38 84
Lus10032764 Myb 90 135

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.000
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.000
ERF084 Arabidopsis thaliana AT1G80580 N 0.000
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.000
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.000
Bo2g095830 Brassica oleracea Bo2g095830 N 0.000
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.000
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.000
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.000
Ca_05803 Cicer arietinum Ca_05803 I 0.000
Ca_20041 Cicer arietinum Ca_20041 I 0.000
Cla015583 Citrullus lanatus Cla015583 I 0.000
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.000
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.000
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.000
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.000
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.000
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.000
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.000
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.000
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.000
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.000
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.000
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.000
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.000
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.000
MDP0000264187 Malus domestica MDP0000264187 I 0.000
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.000
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.000
mgf023662m Mimulus guttatus mgf023662m I 0.000
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.000
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.000
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.000
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.000
OBART03G38710 Oryza barthii OBART03G38710 I 0.000
ORGLA03G0354400 Oryza glaberrima ORGLA03G0354400 I 0.000
OGLUM03G38530 Oryza glumaepatula OGLUM03G38530 I 0.000
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.000
BGIOSGA009571 Oryza indica BGIOSGA009571 I 0.000
OMERI03G35630 Oryza meridionalis OMERI03G35630 I 0.000
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.000
ONIVA03G40360 Oryza nivara ONIVA03G40360 I 0.000
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.000
OPUNC03G35790 Oryza punctata OPUNC03G35790 I 0.000
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.000
ORUFI03G40350 Oryza rufipogon ORUFI03G40350 I 0.000
OS05G0316800 Oryza sativa OS05G0316800 N 0.000
OS03G0815800 Oryza sativa OS03G0815800 I 0.000
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.000
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.000
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.000
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.000
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.000
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.000
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.000
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.000
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.000
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.000
Pm013734 Prunus mume Pm013734 I 0.000
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.000
27446.m000475 Ricinus communis 27446.m000475 I 0.000
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.000
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.000
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.000
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.000
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.000
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.000
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.000
Solyc03g006320.1 Solanum lycopersicum Solyc03g006320.1 I 0.000
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.000
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.000
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.000
TCM_027348 Theobroma cacao TCM_027348 I 0.000
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.000