Pavir.Ab00447 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ab00447 T288986_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.665 0.663
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.665 0.663
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00447.1.p Myb 25 73
Pavir.Ab00447.1.p Myb 79 123

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00954 Aegilops tauschii F775_00954 I 0.676
F775_14392 Aegilops tauschii F775_14392 I 0.661
F775_23034 Aegilops tauschii F775_23034 I 0.701
F775_28392 Aegilops tauschii F775_28392 I 0.665
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.678
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.665
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.684
Cla005406 Citrullus lanatus Cla005406 I 0.670
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.666
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.665
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.718
Gam1 Hordeum vulgare Q96464_HORVU D 0.665
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.685
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.668
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.668
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.663
MDP0000147309 Malus domestica MDP0000147309 I 0.665
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.673
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.668
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.667
OBART03G24120 Oryza barthii OBART03G24120 I 0.685
OB03G32840 Oryza brachyantha OB03G32840 I 0.685
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.685
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.685
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.685
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.685
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.685
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.685
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.685
OS03G0578900 Oryza sativa OS03G0578900 I 0.685
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.680
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.665
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.664
Pm016605 Prunus mume Pm016605 I 0.665
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.665
Si039629m.g Setaria italica Si039629m.g I 0.689
Si006555m.g Setaria italica Si006555m.g I 0.664
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.736
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.661
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.676
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.676
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.661
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.665
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.676
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.665
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.661
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.701
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.736
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.736