Pavir.Ia01264 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia01264 T289250_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KAN4
M00881_2.00 		Arabidopsis thaliana
NWNRTBCNN
NNGVAYNWN		 PBM
Franco-Zorrilla et al.(2014)
KAN4 		0.875 0.936
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.821 0.936
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.821 0.936
KAN1
M00878_2.00 		Arabidopsis thaliana
NNRTNBNN
NNVNAYNN		 PBM
Franco-Zorrilla et al.(2014)
KAN1 		0.786 0.915
KAN1
M02308_2.00 		Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN		 PBM
Weirauch et al.(2014)
pTH7135 		0.786 0.915
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.664 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01264.1.p Myb 102 153

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06315 Aegilops tauschii F775_06315 I
F775_06959 Aegilops tauschii F775_06959 I
F775_14172 Aegilops tauschii F775_14172 I
F775_28589 Aegilops tauschii F775_28589 I
F775_29427 Aegilops tauschii F775_29427 I
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I
Aquca_041_00011 Aquilegia coerulea Aquca_041_00011 I
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I
MYB305 Arabidopsis thaliana AT3G24310 I
ATMYB48 Arabidopsis thaliana AT3G46130 I
MYB27 Arabidopsis thaliana AT3G53200 D
AtMYB79 Arabidopsis thaliana AT4G13480 I
MYB59 Arabidopsis thaliana AT5G59780 D
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I
Bo1g098860 Brassica oleracea Bo1g098860 I
Bo2g025410 Brassica oleracea Bo2g025410 I
Bo3g083130 Brassica oleracea Bo3g083130 I
Bo3g130340 Brassica oleracea Bo3g130340 I
Bo6g067190 Brassica oleracea Bo6g067190 I
Bo7g033260 Brassica oleracea Bo7g033260 I
Bo7g050560 Brassica oleracea Bo7g050560 I
Bo8g082570 Brassica oleracea Bo8g082570 I
Bo9g140750 Brassica oleracea Bo9g140750 I
Bra001941 Brassica rapa Bra001941 I
Bra002533 Brassica rapa Bra002533 I
Bra006694 Brassica rapa Bra006694 I
Bra006977 Brassica rapa Bra006977 I
Bra012482 Brassica rapa Bra012482 I
Bra015029 Brassica rapa Bra015029 I
Bra018223 Brassica rapa Bra018223 I
Bra020289 Brassica rapa Bra020289 I
Bra028369 Brassica rapa Bra028369 I
Bra028550 Brassica rapa Bra028550 I
PK10274.1 Cannabis sativa PK10274.1 I
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I
Carubv10007255m.g Capsella rubella Carubv10007255m.g I
Carubv10014367m.g Capsella rubella Carubv10014367m.g I
Carubv10017875m.g Capsella rubella Carubv10017875m.g I
Carubv10019409m.g Capsella rubella Carubv10019409m.g I
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I
Ca_02593 Cicer arietinum Ca_02593 I
Ca_07872 Cicer arietinum Ca_07872 I
Cla008413 Citrullus lanatus Cla008413 I
Cla013488 Citrullus lanatus Cla013488 I
Cla018062 Citrullus lanatus Cla018062 N
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I
Cucsa.213500 Cucumis sativus Cucsa.213500 I
Cucsa.379880 Cucumis sativus Cucsa.379880 I
Eucgr.A01648 Eucalyptus grandis Eucgr.A01648 I
Eucgr.B03006 Eucalyptus grandis Eucgr.B03006 I
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
gene25149-v1.0-hybrid Fragaria vesca gene25149-v1.0-hybrid I
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I
GLYMA10G26681 Glycine max GLYMA10G26681 I
GLYMA11G15180 Glycine max GLYMA11G15180 I
GLYMA12G07110 Glycine max GLYMA12G07110 I
GLYMA13G40830 Glycine max GLYMA13G40830 I
GLYMA15G04620 Glycine max GLYMA15G04620 I
GLYMA17G17560 Glycine max GLYMA17G17560 I
GLYMA18G50881 Glycine max GLYMA18G50881 I
GLYMA20G20980 Glycine max GLYMA20G20980 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I
MLOC_52439 Hordeum vulgare MLOC_52439 I
MLOC_6786 Hordeum vulgare MLOC_6786 I
MLOC_78504 Hordeum vulgare MLOC_78504 I
LPERR04G14700 Leersia perrieri LPERR04G14700 I
LPERR05G01030 Leersia perrieri LPERR05G01030 I
LPERR12G13390 Leersia perrieri LPERR12G13390 I
Lus10005079.g Linum usitatissimum Lus10005079.g I
Lus10005886.g Linum usitatissimum Lus10005886.g I
Lus10014453.g Linum usitatissimum Lus10014453.g I
Lus10023711.g Linum usitatissimum Lus10023711.g I
Lus10034372.g Linum usitatissimum Lus10034372.g I
MDP0000133412 Malus domestica MDP0000133412 I
MDP0000143156 Malus domestica MDP0000143156 I
MDP0000177010 Malus domestica MDP0000177010 I
MDP0000183451 Malus domestica MDP0000183451 I
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I
cassava9891.m1 Manihot esculenta cassava9891.m1 I
MTR_1g045610 Medicago truncatula MTR_1g045610 I
MTR_1g062940 Medicago truncatula MTR_1g062940 N
MTR_2g096380 Medicago truncatula MTR_2g096380 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
mgf004640m Mimulus guttatus mgf004640m I
mgf020363m Mimulus guttatus mgf020363m I
mgf025691m Mimulus guttatus mgf025691m I
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I
GSMUA_Achr10G19840_001 Musa acuminata GSMUA_Achr10G19840_001 I
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I
OBART01G45730 Oryza barthii OBART01G45730 I
OBART02G24300 Oryza barthii OBART02G24300 I
OBART05G01080 Oryza barthii OBART05G01080 I
OB01G54920 Oryza brachyantha OB01G54920 I
OB02G31640 Oryza brachyantha OB02G31640 I
OB04G25360 Oryza brachyantha OB04G25360 I
OB05G11070 Oryza brachyantha OB05G11070 I
OB11G27690 Oryza brachyantha OB11G27690 I
OB12G23080 Oryza brachyantha OB12G23080 I
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I
BGIOSGA005283 Oryza indica BGIOSGA005283 I
BGIOSGA006030 Oryza indica BGIOSGA006030 I
BGIOSGA014750 Oryza indica BGIOSGA014750 I
BGIOSGA019054 Oryza indica BGIOSGA019054 I
BGIOSGA033532 Oryza indica BGIOSGA033532 I
BGIOSGA035986 Oryza indica BGIOSGA035986 I
OLONG_004480 Oryza longistaminata OLONG_004480 I
OMERI02G23750 Oryza meridionalis OMERI02G23750 I
OMERI05G01150 Oryza meridionalis OMERI05G01150 I
ONIVA05G01120 Oryza nivara ONIVA05G01120 I
ONIVA09G12460 Oryza nivara ONIVA09G12460 I
OPUNC01G44650 Oryza punctata OPUNC01G44650 I
OPUNC02G22200 Oryza punctata OPUNC02G22200 I
OPUNC05G00970 Oryza punctata OPUNC05G00970 I
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I
OS02G0618400 Oryza sativa OS02G0618400 I
OS04G0508500 Oryza sativa OS04G0508500 I
MYBAS1 Oryza sativa OS11G0700500 I
MYBAS2 Oryza sativa OS12G0567300 I
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I
Pavir.J04129 Panicum virgatum Pavir.J04129 I
Pavir.J08441 Panicum virgatum Pavir.J08441 I
Pavir.J11500 Panicum virgatum Pavir.J11500 I
Pavir.J11826 Panicum virgatum Pavir.J11826 I
Pavir.J33560 Panicum virgatum Pavir.J33560 I
Pavir.J36591 Panicum virgatum Pavir.J36591 I
Pavir.J37992 Panicum virgatum Pavir.J37992 I
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I
Pm000809 Prunus mume Pm000809 I
Pm009050 Prunus mume Pm009050 I
Pm015392 Prunus mume Pm015392 I
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I
PRUPE_ppa017942mg Prunus persica PRUPE_ppa017942mg I
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I
29788.m000340 Ricinus communis 29788.m000340 I
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
Si010822m.g Setaria italica Si010822m.g I
Si018007m.g Setaria italica Si018007m.g I
Si022826m.g Setaria italica Si022826m.g I
Si023104m.g Setaria italica Si023104m.g I
Si024470m.g Setaria italica Si024470m.g I
Si026803m.g Setaria italica Si026803m.g I
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I
Sb04g026210 Sorghum bicolor Sb04g026210 I
Sb08g018580 Sorghum bicolor Sb08g018580 I
Sb09g001590 Sorghum bicolor Sb09g001590 I
TCM_018971 Theobroma cacao TCM_018971 I
TCM_022293 Theobroma cacao TCM_022293 I
TCM_041904 Theobroma cacao TCM_041904 I
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I
Traes_2AL_605C25CDF Triticum aestivum Traes_2AL_605C25CDF I
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I
TRIUR3_16687 Triticum urartu TRIUR3_16687 I
TRIUR3_16862 Triticum urartu TRIUR3_16862 I
TRIUR3_18020 Triticum urartu TRIUR3_18020 I
TRIUR3_22432 Triticum urartu TRIUR3_22432 I
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I
AtMYB27 Vitis vinifera VIT_08s0007g04830 I
GRMZM2G013581 Zea mays GRMZM2G013581 N
GRMZM2G027697 Zea mays GRMZM2G027697 I
GRMZM2G043792 Zea mays GRMZM2G043792 I
GRMZM2G047626 Zea mays GRMZM2G047626 I
GRMZM2G048136 Zea mays GRMZM2G048136 I
GRMZM2G070849 Zea mays GRMZM2G070849 I
GRMZM2G130149 Zea mays GRMZM2G130149 I
GRMZM2G305856 Zea mays GRMZM2G305856 I