Thhalv10005383m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10005383m.g T289970_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.716 0.822
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.716 0.822
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.716 0.822
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005383m Myb 10 58
Thhalv10005383m Myb 117 162

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0006_2242 Arabidopsis lyrata Al_scaffold_0006_2242 N 0.700
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.711
SRM1 Arabidopsis thaliana AT5G08520 D 0.716
AT5G23650 Arabidopsis thaliana AT5G23650 N 0.672
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.793
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.716
Bo3g004970 Brassica oleracea Bo3g004970 I 0.668
Bo7g097510 Brassica oleracea Bo7g097510 I 0.673
Bo9g174380 Brassica oleracea Bo9g174380 I 0.668
Bra009699 Brassica rapa Bra009699 I 0.682
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.705
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.702
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.705
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.704
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.684
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.716