Bra004509 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra004509 T292534_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC043
M02370_2.00 		Arabidopsis thaliana
NTTACGYWAN
NTWRCGTAAN		 PBM
Weirauch et al.(2014)
pTH8161 		0.970 0.982
NAC043
M07192_2.00 		Arabidopsis thaliana
TRCKTVHDNHNYAMG
CKTRNDNHDBAMGYA		 Dap-seq
OMalley et al.(2016)
NST1_colamp_a 		0.970 0.982
NAC043
M07193_2.00 		Arabidopsis thaliana
RCKTVHDNHNYAMGYWA
TWRCKTRNDNHDBAMGY		 Dap-seq
OMalley et al.(2016)
NST1_col_v31 		0.970 0.982
NAC066
M00978_2.00 		Arabidopsis thaliana
NBNNHNBNNN
NNNVNDNNVN		 PBM
Lindemose et al.(2014)
NST2 		0.940 0.895
OS06G0131700
M02378_2.00 		Oryza sativa
NNNNHMDNND
HNNHKDNNNN		 PBM
Weirauch et al.(2014)
pTH8356 		0.928 0.886
NAC012
M00971_2.00 		Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN		 PBM
Lindemose et al.(2014)
SND1 		0.928 0.912
MDP0000762302
M02383_2.00 		Malus domestica
NNNAMKHNWN
NWNDMKTNNN		 PBM
Weirauch et al.(2014)
pTH9205 		0.919 0.886
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004509.1-P NAC/NAM 17 144

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11081 Aegilops tauschii F775_11081 I 0.933
F775_21627 Aegilops tauschii F775_21627 I 0.879
F775_42361 Aegilops tauschii F775_42361 I 0.886
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.892
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I 0.953
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.896
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.946
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.928
NST1 Arabidopsis lyrata scaffold_403649.1 I 0.970
NST2 Arabidopsis lyrata scaffold_503455.1 I 0.955
NAC012 Arabidopsis thaliana AT1G32770 D 0.928
NAC043 Arabidopsis thaliana AT2G46770 D 0.970
NAC066 Arabidopsis thaliana AT3G61910 D 0.940
Bostr.13158s0196 Boechera stricta Bostr.13158s0196 I 0.958
Bostr.25993s0090 Boechera stricta Bostr.25993s0090 I 0.970
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.927
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.884
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.886
BRADI3G13727 Brachypodium distachyon BRADI3G13727 I 0.917
Bo4g006990 Brassica oleracea Bo4g006990 I 0.970
Bo4g197330 Brassica oleracea Bo4g197330 I 0.969
Bo5g049360 Brassica oleracea Bo5g049360 I 0.927
Bo5g086900 Brassica oleracea Bo5g086900 I 0.921
Bo6g079180 Brassica oleracea Bo6g079180 I 0.944
Bra003478 Brassica rapa Bra003478 I 0.958
Bra007640 Brassica rapa Bra007640 I 0.958
Bra010183 Brassica rapa Bra010183 I 0.921
Bra023288 Brassica rapa Bra023288 I 0.925
Bra040486 Brassica rapa Bra040486 I 0.969
PK04961.1 Cannabis sativa PK04961.1 I 0.949
PK22182.1 Cannabis sativa PK22182.1 I 0.921
Cagra.0050s0024 Capsella grandiflora Cagra.0050s0024 I 0.970
Cagra.0483s0052 Capsella grandiflora Cagra.0483s0052 I 0.954
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.928
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.928
Carubv10019223m.g Capsella rubella Carubv10019223m.g I 0.954
Carubv10023503m.g Capsella rubella Carubv10023503m.g I 0.970
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.915
Ca_22425 Cicer arietinum Ca_22425 I 0.953
Ca_22426 Cicer arietinum Ca_22426 I 0.954
Cla006806 Citrullus lanatus Cla006806 I 0.958
Cla011508 Citrullus lanatus Cla011508 I 0.947
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.928
Ciclev10024035m.g Citrus clementina Ciclev10024035m.g I 0.950
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.928
orange1.1g015853m.g Citrus sinensis orange1.1g015853m.g I 0.950
Cucsa.120870 Cucumis sativus Cucsa.120870 I 0.958
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.947
Eucgr.D01671 Eucalyptus grandis Eucgr.D01671 I 0.932
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.921
Thhalv10001506m.g Eutrema salsugineum Thhalv10001506m.g I 0.970
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.928
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.928
gene18635-v1.0-hybrid Fragaria vesca gene18635-v1.0-hybrid I 0.913
gene18636-v1.0-hybrid Fragaria vesca gene18636-v1.0-hybrid I 0.959
GLYMA07G05660 Glycine max GLYMA07G05660 I 0.954
GLYMA16G02200 Glycine max GLYMA16G02200 I 0.954
GLYMA19G44890 Glycine max GLYMA19G44890 I 0.876
Gorai.001G150800 Gossypium raimondii Gorai.001G150800 I 0.955
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.925
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.928
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.921
Gorai.007G112500 Gossypium raimondii Gorai.007G112500 I 0.958
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.937
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.920
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.886
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.933
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.886
LPERR06G01790 Leersia perrieri LPERR06G01790 I 0.928
LPERR08G01440 Leersia perrieri LPERR08G01440 I 0.926
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.932
Lus10002687.g Linum usitatissimum Lus10002687.g I 0.956
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.925
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.879
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.932
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.876
Lus10030205.g Linum usitatissimum Lus10030205.g I 0.956
Lus10032238.g Linum usitatissimum Lus10032238.g I 0.883
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.925
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I 0.954
MDP0000140229 Malus domestica MDP0000140229 I 0.919
MDP0000563165 Malus domestica MDP0000563165 I 0.959
MDP0000762302 Malus domestica MDP0000762302 D 0.919
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.935
cassava33021.m1 Manihot esculenta cassava33021.m1 I 0.957
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.928
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.925
MTR_8g024480 Medicago truncatula MTR_8g024480 I 0.954
mgf022455m Mimulus guttatus mgf022455m I 0.949
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.897
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.901
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.946
GSMUA_Achr7G05980_001 Musa acuminata GSMUA_Achr7G05980_001 I 0.943
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.943
GSMUA_AchrUn_randomG21980_001 Musa acuminata GSMUA_AchrUn_randomG21980_001 I 0.938
OBART06G01950 Oryza barthii OBART06G01950 I 0.928
OBART08G01110 Oryza barthii OBART08G01110 I 0.928
OB02G19660 Oryza brachyantha OB02G19660 I 0.887
OB06G11970 Oryza brachyantha OB06G11970 I 0.928
OB08G11290 Oryza brachyantha OB08G11290 I 0.928
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I 0.928
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I 0.928
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I 0.928
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I 0.928
BGIOSGA022006 Oryza indica BGIOSGA022006 I 0.928
BGIOSGA027883 Oryza indica BGIOSGA027883 I 0.928
OMERI06G01850 Oryza meridionalis OMERI06G01850 I 0.928
OMERI08G01360 Oryza meridionalis OMERI08G01360 I 0.934
ONIVA06G02290 Oryza nivara ONIVA06G02290 I 0.928
ONIVA08G01130 Oryza nivara ONIVA08G01130 I 0.928
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.872
OPUNC06G01800 Oryza punctata OPUNC06G01800 I 0.928
OPUNC08G01110 Oryza punctata OPUNC08G01110 I 0.928
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I 0.928
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I 0.928
OS06G0131700 Oryza sativa OS06G0131700 D 0.928
OS08G0115800 Oryza sativa OS08G0115800 I 0.928
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.879
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.879
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.883
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.883
Pavir.J07835 Panicum virgatum Pavir.J07835 I 0.925
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.933
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.933
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.941
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.920
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.951
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.921
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.954
Pm018292 Prunus mume Pm018292 I 0.959
Pm024260 Prunus mume Pm024260 I 0.928
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.928
PRUPE_ppa020746mg Prunus persica PRUPE_ppa020746mg I 0.959
27964.m000369 Ricinus communis 27964.m000369 I 0.958
30068.m002591 Ricinus communis 30068.m002591 I 0.928
SapurV1A.0003s0530 Salix purpurea SapurV1A.0003s0530 I 0.936
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.921
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I 0.954
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.920
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.920
Si006565m.g Setaria italica Si006565m.g I 0.939
Si007822m.g Setaria italica Si007822m.g I 0.883
Si017641m.g Setaria italica Si017641m.g I 0.880
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.916
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.916
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.883
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.933
Sb10g002120 Sorghum bicolor Sb10g002120 I 0.939
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.888
TCM_005047 Theobroma cacao TCM_005047 I 0.958
TCM_015621 Theobroma cacao TCM_015621 I 0.928
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.886
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.933
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.933
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.886
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.886
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.886
TRIUR3_14543 Triticum urartu TRIUR3_14543 I 0.879
TRIUR3_27911 Triticum urartu TRIUR3_27911 I 0.877
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.948
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.943
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.888
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.936
GRMZM2G091490 Zea mays GRMZM2G091490 I 0.909
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.933
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.888
GRMZM2G171395 Zea mays GRMZM2G171395 I 0.939