CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Minc05954
(
Meloidogyne incognita
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Minc05954
T307378_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc05954
Nuclear receptor
5
85
KQCKVCGAKEHVGFHYGVCTCRACGSFFRRHLESEYEWKYNKCQCSPKKLSKENEDEKSPTDLTKCKKCRLEKCFSVGMKK
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne incognita
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-nMf.1.1.scaf11243-snap-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf11243-snap-gene-0.6
N
0.830
maker-nMf.1.1.scaf08489-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf08489-snap-gene-0.4
N
0.832
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
N
0.806
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
N
0.888
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
N
0.792
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
N
0.766
Minc06648
Meloidogyne incognita
Minc06648
N
0.803
Minc18240
Meloidogyne incognita
Minc18240
N
0.785
Minc11362
Meloidogyne incognita
Minc11362
N
0.777
Minc11361
Meloidogyne incognita
Minc11361
N
0.806
Minc11359
Meloidogyne incognita
Minc11359
N
0.788
Minc03112
Meloidogyne incognita
Minc03112
N
0.878
Minc05955
Meloidogyne incognita
Minc05955
N
0.860
Minc05953
Meloidogyne incognita
Minc05953
N
0.890
Minc05944
Meloidogyne incognita
Minc05944
N
0.828
Minc05939
Meloidogyne incognita
Minc05939
N
0.769
Minc05938
Meloidogyne incognita
Minc05938
N
0.831
Minc03951
Meloidogyne incognita
Minc03951
N
0.815
Minc03125
Meloidogyne incognita
Minc03125
N
0.803
Minc03124
Meloidogyne incognita
Minc03124
N
0.854
Minc03116
Meloidogyne incognita
Minc03116
N
0.865
Minc03113
Meloidogyne incognita
Minc03113
N
0.766