Alligator_sinensis_CCG011609.1 (Alligator sinensis)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00870 (P53) IPR011615 Alligator_sinensis_CCG011609.1 T311224_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TP73
M08035_2.00 		Homo sapiens
RCADGYHSDGRCWDG
CHWGYCHSDRCHTGY		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_rapamycin 		0.974 0.974
TP73
M08036_2.00 		Homo sapiens
DRRCAWGYHCWGRCWTGYH
DRCAWGYCWGDRCWTGYYH		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_vehicle 		0.974 0.974
TP73
M08037_2.00 		Homo sapiens
RCMDGYBCHNDCHKG
CMDGHNDGVRCHKGY		 ChIP-seq
Chen et al.(2011)
GSE18650_TP73 		0.974 0.974
TP73
M09336_2.00 		Homo sapiens
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_HUMAN.H11MO.0.A 		0.974 0.974
TP73
M11196_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P73_Q6 		0.974 0.974
Trp73
M03438_2.00 		Mus musculus
DRCAWGTYNNRACAYGYH
DRCRTGTYNNRACWTGYH		 SELEX
Jolma et al.(2013)
Tp73_1 		0.964 0.964
Trp73
M09339_2.00 		Mus musculus
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_MOUSE.H11MO.0.B 		0.964 0.964
Trp63
M09338_2.00 		Mus musculus
DRCAWGYHCHRRCHTGYHN
NDRCADGYYDGDRCWTGYH		 Misc
Kulakovskiy et al.(2013)
P63_MOUSE.H11MO.0.B 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011609.1 p53 43 239

Links

Other p53 family TFs
Other Alligator sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLIG1 Bos taurus ENSBTAG00000037547 I
OLIG2 Callithrix jacchus ENSCJAG00000009439 I
OLIG1 Canis familiaris ENSCAFG00000031953 I
ENSCPOG00000020839 Cavia porcellus ENSCPOG00000020839 I
ENSCSAG00000018686 Chlorocebus sabaeus ENSCSAG00000018686 I
OLIG1 Dasypus novemcinctus ENSDNOG00000042196 I
ENSETEG00000011024 Echinops telfairi ENSETEG00000011024 I
OLIG1 Homo sapiens ENSG00000184221 D
ENSSTOG00000027713 Ictidomys tridecemlineatus ENSSTOG00000027713 I
ENSLOCG00000017507 Lepisosteus oculatus ENSLOCG00000017507 I
ENSLAFG00000007964 Loxodonta africana ENSLAFG00000007964 I
OLIG1 Monodelphis domestica ENSMODG00000021070 I
Olig1 Mus musculus ENSMUSG00000046160 I
ENSNLEG00000003823 Nomascus leucogenys ENSNLEG00000003823 I
OLIG1 Ochotona princeps ENSOPRG00000007722 I
Ogr17935 Ophisaurus gracilis Ogr17935 I
ENSOANG00000002423 Ornithorhynchus anatinus ENSOANG00000002423 I
OLIG1 Oryctolagus cuniculus ENSOCUG00000027389 I
OLIG1 Otolemur garnettii ENSOGAG00000033584 I
OLIG1 Pan troglodytes ENSPTRG00000031440 I
Pvit_10684 Pogona vitticeps Pvit_10684 I
OLIG1 Pteropus vampyrus ENSPVAG00000001702 I
Olig1 Rattus norvegicus ENSRNOG00000028648 I
ENSSHAG00000004906 Sarcophilus harrisii ENSSHAG00000004906 I
OLIG1 Sus scrofa ENSSSCG00000012040 I
OLIG1 Vicugna pacos ENSVPAG00000005098 I
olig1 Xenopus tropicalis XB-GENE-478472 I