ENSGACG00000007469 (Gasterosteus aculeatus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSGACG00000007469 T313556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSGACG00000007469
M02432_2.00		 Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.864 0.864
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.864 0.864
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.841 0.841
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.841 0.841
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.795 0.795
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02432_2.00 Pipsqueak 52 96

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000009917 Pipsqueak 494 538

Links

Other Pipsqueak family TFs
Other Gasterosteus aculeatus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I
S1FA3 Arabidopsis thaliana AT3G09735 D
S1FA2 Arabidopsis thaliana AT2G37120 I
S1FA1 Arabidopsis thaliana AT3G53370 I
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I
Bo3g061880 Brassica oleracea Bo3g061880 I
Bo00703s130 Brassica oleracea Bo00703s130 I
Bo1g144300 Brassica oleracea Bo1g144300 I
Bo00703s150 Brassica oleracea Bo00703s150 I
Bo6g067310 Brassica oleracea Bo6g067310 I
Bo5g138130 Brassica oleracea Bo5g138130 I
Bra039779 Brassica rapa Bra039779 I
Bra034084 Brassica rapa Bra034084 I
Bra029784 Brassica rapa Bra029784 I
Bra006994 Brassica rapa Bra006994 I
Bra003132 Brassica rapa Bra003132 I
PK08477.1 Cannabis sativa PK08477.1 I
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I
Carubv10025429m.g Capsella rubella Carubv10025429m.g I
Carubv10015035m.g Capsella rubella Carubv10015035m.g I
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I
Ca_12027 Cicer arietinum Ca_12027 I
Cla018106 Citrullus lanatus Cla018106 I
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I
Cucsa.124240 Cucumis sativus Cucsa.124240 I
Cucsa.307040 Cucumis sativus Cucsa.307040 I
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I
GLYMA10G05790 Glycine max GLYMA10G05790 I
GLYMA13G20160 Glycine max GLYMA13G20160 I
GLYMA19G36350 Glycine max GLYMA19G36350 I
GLYMA03G33640 Glycine max GLYMA03G33640 I
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I
Lus10015073.g Linum usitatissimum Lus10015073.g I
Lus10023177.g Linum usitatissimum Lus10023177.g I
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I
MTR_7g100905 Medicago truncatula MTR_7g100905 I
MTR_7g100890 Medicago truncatula MTR_7g100890 I
MTR_7g100880 Medicago truncatula MTR_7g100880 I
mgf004062m Mimulus guttatus mgf004062m I
mgf000337m Mimulus guttatus mgf000337m I
OB04G18770 Oryza brachyantha OB04G18770 I
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I
29805.m001471 Ricinus communis 29805.m001471 I
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I
TCM_022113 Theobroma cacao TCM_022113 I
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I