Alligator_sinensis_CCG020164.1 (Alligator sinensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Alligator_sinensis_CCG020164.1 T314417_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020164.1 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Alligator sinensis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Z519_06242 Cladophialophora bantiana Z519_06242 N
PV07_12206 Cladophialophora immunda PV07_12206 N
A1O5_07678 Cladophialophora psammophila A1O5_07678 N
DOTSEDRAFT_73340 Dothistroma septosporum DOTSEDRAFT_73340 N
Z517_12319 Fonsecaea pedrosoi Z517_12319 N
estExt_Genewise1Plus.C_120407 Mycosphaerella fijiensis estExt_Genewise1Plus.C_120407 I
SEPMUDRAFT_149198 Sphaerulina musiva SEPMUDRAFT_149198 N