Alligator_sinensis_CCG009270.1 (Alligator sinensis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Alligator_sinensis_CCG009270.1 T317740_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfkb2
M09356_2.00 		Mus musculus
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C 		0.817 0.817
NFKB2
M03446_2.00 		Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN		 SELEX
Jolma et al.(2013)
NFKB2_1 		0.805 0.805
NFKB2
M05699_2.00 		Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX 		0.805 0.805
NFKB2
M09344_2.00 		Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B 		0.805 0.805
NFKB2
M05700_2.00 		Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX 		0.805 0.805
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG009270.1 Rel 70 250

Links

Other Rel family TFs
Other Alligator sinensis TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007472 Ailuropoda melanoleuca ENSAMEG00000007472 N
NFX1 Anolis carolinensis ENSACAG00000002412 N
ENSP00000368856-D1 Bos grunniens ENSP00000368856-D1 N
NFX1 Bos taurus ENSBTAG00000012385 N
Brh_R011790 Buceros rhinoceros Brh_R011790 N
Aan_R015342 Calypte anna Aan_R015342 N
NFX1 Canis familiaris ENSCAFG00000001848 N
NFX1 Cavia porcellus ENSCPOG00000003470 N
ENSCSAG00000009971 Chlorocebus sabaeus ENSCSAG00000009971 N
NFX1 Choloepus hoffmanni ENSCHOG00000009225 N
NFX1 Dasypus novemcinctus ENSDNOG00000002079 N
ENSFCAG00000007905 Felis catus ENSFCAG00000007905 N
ENSFALG00000013143 Ficedula albicollis ENSFALG00000013143 N
ENSGMOG00000006198 Gadus morhua ENSGMOG00000006198 N
Gfo_R000789 Geospiza fortis Gfo_R000789 N
NFX1 Gorilla gorilla ENSGGOG00000006751 N
NFX1 Homo sapiens ENSG00000086102 N
ENSLACG00000000769 Latimeria chalumnae ENSLACG00000000769 N
ENSLOCG00000011211 Lepisosteus oculatus ENSLOCG00000011211 N
ENSP00000368856 Macaca fascicularis ENSP00000368856 N
NFX1 Monodelphis domestica ENSMODG00000003990 N
ENSMPUG00000004111 Mustela putorius furo ENSMPUG00000004111 N
Nfx1 Mus musculus ENSMUSG00000028423 N
Myotis_brandtii_NFX1_10010343 Myotis brandtii Myotis_brandtii_NFX1_10010343 N
NFX1 Myotis lucifugus ENSMLUG00000011069 N
ENSNLEG00000005096 Nomascus leucogenys ENSNLEG00000005096 N
ENSONIG00000006192 Oreochromis niloticus ENSONIG00000006192 N
NFX1 Oryctolagus cuniculus ENSOCUG00000008957 N
NFX1 Otolemur garnettii ENSOGAG00000000775 N
ENSOARG00000009478 Ovis aries ENSOARG00000009478 N
NFX1 Pan troglodytes ENSPTRG00000020858 N
ENSPANG00000025304 Papio anubis ENSPANG00000025304 N
ENSPSIG00000008420 Pelodiscus sinensis ENSPSIG00000008420 N
ENSPFOG00000012547 Poecilia formosa ENSPFOG00000012547 N
ENSPPYG00000019136 Pongo abelii ENSPPYG00000019136 N
NFX1 Pteropus vampyrus ENSPVAG00000011479 N
Nfx1 Rattus norvegicus ENSRNOG00000009015 N
ENSSHAG00000010272 Sarcophilus harrisii ENSSHAG00000010272 N
NFX1 Taeniopygia guttata ENSTGUG00000007055 N
Tal_R011854 Tyto alba Tal_R011854 N
XP_002935327 Xenopus tropicalis XP_002935327 N