Ogr00666 (Ophisaurus gracilis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Ogr00666 T317802_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rela
M08039_2.00 		Mus musculus
DGGRVTTTCCM
KGGAAABYCCH		 ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim 		0.737 0.737
Rela
M08038_2.00 		Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY
RVARSNNWRGRRRRDNRRRDRNRRGRRRDD		 ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input 		0.737 0.737
Rela
M09355_2.00 		Mus musculus
KGGRVTTYCCM
KGGRAABYCCM		 Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A 		0.737 0.737
RELA
M02711_2.00 		Homo sapiens
SGGRVTTTCC
GGAAABYCCS		 SELEX
Mathelier et al.(2014)
MA0107.1 		0.725 0.725
RELA
M07999_2.00 		Homo sapiens
DGGGRMTTTCCMVN
NBKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford 		0.725 0.725
RELA
M08000_2.00 		Homo sapiens
NDGGGRMWTTCCHN
NDGGAAWKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford 		0.725 0.725
RELA
M08001_2.00 		Homo sapiens
NDGGGRMTTTCCMVN
NBKGGAAAKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford 		0.725 0.725
RELA
M08002_2.00 		Homo sapiens
DGGGRHTTTCCMVNN
NNBKGGAAADYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford 		0.725 0.725
RELA
M08003_2.00 		Homo sapiens
DGGGRVTTTCCHVN
NBDGGAAABYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford 		0.725 0.725
RELA
M08004_2.00 		Homo sapiens
NDGGGRMTTTCCMNN
NNKGGAAAKYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford 		0.725 0.725
RELA
M08005_2.00 		Homo sapiens
NDGGGRHTTTCCMVN
NBKGGAAADYCCCHN		 ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford 		0.725 0.725
RELA
M08006_2.00 		Homo sapiens
GGGRVTTTCCM
KGGAAABYCCC		 ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford 		0.725 0.725
RELA
M08007_2.00 		Homo sapiens
DGGGRMTTTCCMV
BKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford 		0.725 0.725
RELA
M08008_2.00 		Homo sapiens
DGGGRMTTTCCMNNN
NNNKGGAAAKYCCCH		 ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford 		0.725 0.725
RELA
M09351_2.00 		Homo sapiens
NWGGGRHWTTCCMV
BKGGAAWDYCCCWN		 Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A 		0.725 0.725
RELA
M09626_2.00 		Homo sapiens
DGGGRVWTTCCM
KGGAAWBYCCCH		 Misc
Heinz et al.(2010)
GM12787-p65_GSE19485 		0.725 0.725
RELA
M11237_2.00 		Homo sapiens
BGGRVTTTCC
GGAAABYCCV		 Transfac
Matys et al.(2006)
V$NFKAPPAB65_01 		0.725 0.725
RELA
M11238_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_02 		0.725 0.725
RELA
M11239_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_03 		0.725 0.725
RELA
M11240_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_04 		0.725 0.725
RELA
M11241_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_05 		0.725 0.725
RELA
M11242_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RELA_Q6 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr00666 Rel 121 287

Links

Other Rel family TFs
Other Ophisaurus gracilis TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017369 Ailuropoda melanoleuca ENSAMEG00000017369 I 0.747
ENSACAG00000004399 Anolis carolinensis ENSACAG00000004399 N 0.839
ENSP00000384273-D1 Bos grunniens ENSP00000384273-D1 I 0.747
RELA Bos taurus ENSBTAG00000013895 I 0.747
RELA Callithrix jacchus ENSCJAG00000002037 I 0.753
RELA Canis familiaris ENSCAFG00000013334 I 0.747
RELA Cavia porcellus ENSCPOG00000020593 I 0.754
Cmyd_10013204 Chelonia mydas Cmyd_10013204 I 0.802
ENSCSAG00000007981 Chlorocebus sabaeus ENSCSAG00000007981 I 0.754
ENSCHOG00000004207 Choloepus hoffmanni ENSCHOG00000004207 I 0.835
RELA Dasypus novemcinctus ENSDNOG00000039743 I 0.753
RELA Equus caballus ENSECAG00000013763 I 0.747
RELA Felis catus ENSFCAG00000005696 I 0.749
RELA Gorilla gorilla ENSGGOG00000011810 I 0.759
RELA Homo sapiens ENSG00000173039 D 0.886
ENSSTOG00000027336 Ictidomys tridecemlineatus ENSSTOG00000027336 I 0.749
RELA Loxodonta africana ENSLAFG00000021967 I 0.759
ENSP00000384273 Macaca fascicularis ENSP00000384273 I 0.754
RELA Macaca mulatta ENSMMUG00000007418 I 0.754
ENSMEUG00000005955 Macropus eugenii ENSMEUG00000005955 I 0.710
RELA Microcebus murinus ENSMICG00000008872 I 0.759
RELA Monodelphis domestica ENSMODG00000009603 I 0.777
Rela Mus musculus ENSMUSG00000024927 D 0.741
Myotis_brandtii_Rela_10030730 Myotis brandtii Myotis_brandtii_Rela_10030730 I 0.749
RELA Myotis lucifugus ENSMLUG00000008727 I 0.749
ENSNLEG00000005769 Nomascus leucogenys ENSNLEG00000005769 I 0.759
ENSOANG00000004820 Ornithorhynchus anatinus ENSOANG00000004820 I 0.712
RELA Otolemur garnettii ENSOGAG00000014117 I 0.747
ENSOARG00000017426 Ovis aries ENSOARG00000017426 I 0.735
RELA Pan troglodytes ENSPTRG00000003889 I 0.759
ENSPANG00000013650 Papio anubis ENSPANG00000013650 I 0.754
ENSPSIG00000002944 Pelodiscus sinensis ENSPSIG00000002944 I 0.814
Pvit_10466 Pogona vitticeps Pvit_10466 I 0.922
ENSPPYG00000003053 Pongo abelii ENSPPYG00000003053 I 0.759
RELA Pteropus vampyrus ENSPVAG00000009983 I 0.753
Rela Rattus norvegicus ENSRNOG00000030888 I 0.753
RELA Sorex araneus ENSSARG00000003535 I 0.737
RELA Sus scrofa ENSSSCG00000012981 I 0.753
RELA Tupaia belangeri ENSTBEG00000004751 I 0.835
RELA Tursiops truncatus ENSTTRG00000002311 I 0.743
rela.L Xenopus laevis XB-GENE-946512 I 0.766
rela Xenopus tropicalis XB-GENE-946506 I 0.760