Pvit_13855 (Pogona vitticeps)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Pvit_13855 T317819_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfkb2
M09356_2.00 		Mus musculus
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C 		0.805 0.805
NFKB2
M03446_2.00 		Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN		 SELEX
Jolma et al.(2013)
NFKB2_1 		0.799 0.799
NFKB2
M05699_2.00 		Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX 		0.799 0.799
NFKB2
M09344_2.00 		Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B 		0.799 0.799
NFKB2
M05700_2.00 		Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX 		0.799 0.799
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_13855 Rel 40 220

Links

Other Rel family TFs
Other Pogona vitticeps TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N
BGIBMGA005288 Bombyx mori BGIBMGA005288 N
CBG04066 Caenorhabditis briggsae CBG04066 N
CBG09136 Caenorhabditis briggsae CBG09136 N
hmg-4 Caenorhabditis elegans WBGene00001974 N
CRE03995 Caenorhabditis remanei CRE03995 N
csin108029 Clonorchis sinensis csin108029 N
GI18750 Drosophila mojavensis FBgn0141489 N
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N
ECPE_0001309901 Echinostoma caproni ECPE_0001309901 N
HCOI02106600 Haemonchus contortus HCOI02106600 N
HCOI01420700 Haemonchus contortus HCOI01420700 N
HMEL015307 Heliconius melpomene HMEL015307 N
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N
HmN_000028000 Hymenolepis microstoma HmN_000028000 N
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N
Minc04648 Meloidogyne incognita Minc04648 N
Minc03634 Meloidogyne incognita Minc03634 N
NECAME_16525 Necator americanus NECAME_16525 N
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N
PPA06513 Pristionchus pacificus PPA06513 N
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N
A_01848 Schistosoma haematobium A_01848 N
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N
Smp_148930 Schistosoma mansoni Smp_148930 N
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N
L889_g29516 Steinernema feltiae L889_g29516 N
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N
TASK_0000475801 Taenia asiatica TASK_0000475801 N
TsM_000111500 Taenia solium TsM_000111500 N
TriadG64155 Trichoplax adhaerens TriadG64155 I