RFX7 (Anolis carolinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSACAG00000008482 T318112_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.792 0.987
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.792 0.987
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.792 0.987
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.792 0.987
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.709 0.608
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.709 0.608
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.709 0.608
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.709 0.608
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.709 0.608
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.709 0.608
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.709 0.608
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.709 0.608
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.709 0.608
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.709 0.608
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.709 0.608
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.709 0.608
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.709 0.608
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.709 0.608
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.709 0.608
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000008319 RFX 26 106

Links

Other RFX family TFs
Other Anolis carolinensis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.685
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.704
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.792
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.777
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.707
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.660
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.660
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.672
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.792
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.713
AALB008384 Anopheles albimanus AALB008384 I 0.688
AARA004226 Anopheles arabiensis AARA004226 I 0.688
AATE016751 Anopheles atroparvus AATE016751 I 0.688
ACHR008891 Anopheles christyi ACHR008891 I 0.688
ACOM036649 Anopheles coluzzii ACOM036649 I 0.688
ACUA017169 Anopheles culicifacies ACUA017169 I 0.688
ADAC008404 Anopheles darlingi ADAC008404 I 0.688
ADIR010232 Anopheles dirus ADIR010232 I 0.688
AEPI006624 Anopheles epiroticus AEPI006624 I 0.688
AFAF011654 Anopheles farauti AFAF011654 I 0.688
AFUN011072 Anopheles funestus AFUN011072 I 0.688
AGAP013226 Anopheles gambiae AGAP013226 I 0.688
AMEC002251 Anopheles melas AMEC002251 I 0.688
AMEM009524 Anopheles merus AMEM009524 I 0.688
AMIN003942 Anopheles minimus AMIN003942 I 0.688
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.688
ASIS020285 Anopheles sinensis ASIS020285 I 0.688
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.688
GB49419 Apis mellifera GB49419 I 0.699
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.711
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.787
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.712
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.783
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.784
ACEP24602 Atta cephalotes ACEP24602 I 0.699
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.677
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.709
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.787
RFX7 Bos taurus ENSBTAG00000000565 I 0.792
RFX5 Bos taurus ENSBTAG00000017580 I 0.709
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.727
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.777
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.693
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.709
Aan_R010941 Calypte anna Aan_R010941 I 0.694
Aan_R011989 Calypte anna Aan_R011989 I 0.787
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.681
RFX5 Canis familiaris ENSCAFG00000012661 I 0.709
RFX7 Canis familiaris ENSCAFG00000016029 I 0.792
CapteG131555 Capitella teleta CapteG131555 I 0.689
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.792
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.709
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.666
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.686
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.709
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.792
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.792
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.705
CLEC011984 Cimex lectularius CLEC011984 I 0.682
csin102559 Clonorchis sinensis csin102559 I 0.717
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.703
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.685
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.685
KGM_16732 Danaus plexippus KGM_16732 I 0.690
rfx5 Danio rerio ENSDARG00000063258 I 0.716
rfx7 Danio rerio ENSDARG00000077237 I 0.779
RFX7 Danio rerio ENSDARG00000103691 I 0.783
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.699
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.792
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.655
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.693
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.709
GF16654 Drosophila ananassae FBgn0093675 I 0.684
GG10435 Drosophila erecta FBgn0102744 I 0.685
GH18082 Drosophila grimshawi FBgn0125550 I 0.685
CG9727 Drosophila melanogaster FBgn0037445 I 0.685
GI24583 Drosophila mojavensis FBgn0147305 I 0.685
GL22063 Drosophila persimilis FBgn0159655 I 0.685
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.685
GM10553 Drosophila sechellia FBgn0165499 I 0.685
GD19544 Drosophila simulans FBgn0191039 I 0.685
GJ22650 Drosophila virilis FBgn0209754 I 0.685
GK13786 Drosophila willistoni FBgn0215794 I 0.685
GE24099 Drosophila yakuba FBgn0241238 I 0.685
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.704
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.704
RFX5 Echinops telfairi ENSETEG00000013503 I 0.710
RFX7 Echinops telfairi ENSETEG00000015037 I 0.772
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.658
RFX7 Equus caballus ENSECAG00000002379 I 0.787
RFX5 Equus caballus ENSECAG00000024774 I 0.709
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.697
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.777
D915_00887 Fasciola hepatica D915_00887 I 0.658
RFX5 Felis catus ENSFCAG00000005568 I 0.709
RFX7 Felis catus ENSFCAG00000029408 I 0.787
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.719
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.792
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.769
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.779
RFX5 Gallus gallus ENSGALG00000000836 I 0.712
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.779
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.759
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.719
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.787
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.658
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.693
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.709
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.699
HMEL011744 Heliconius melpomene HMEL011744 I 0.691
RFX5 Homo sapiens ENSG00000143390 D 0.709
RFX7 Homo sapiens ENSG00000181827 D 0.792
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.704
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.713
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.711
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.711
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.708
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.711
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.687
ISCW001129 Ixodes scapularis ISCW001129 I 0.679
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.792
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.715
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.784
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.701
LotgiG138119 Lottia gigantea LotgiG138119 I 0.703
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.792
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.709
LCUP014592 Lucilia cuprina LCUP014592 I 0.688
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.787
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.709
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.709
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.787
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.692
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.710
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.715
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.792
MCINX003210 Melitaea cinxia MCINX003210 I 0.690
RFX7 Microcebus murinus ENSMICG00000000614 I 0.679
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.792
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.662
MDOA009335 Musca domestica MDOA009335 I 0.688
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.792
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.709
Rfx5 Mus musculus ENSMUSG00000005774 I 0.709
Rfx7 Mus musculus ENSMUSG00000037674 D 0.792
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.704
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.785
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.704
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.787
NV23037 Nasonia vitripennis NV23037 I 0.698
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.710
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.792
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.709
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.686
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.715
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.697
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.698
T265_11740 Opisthorchis viverrini T265_11740 I 0.717
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.716
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.760
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.779
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.792
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.709
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.792
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.714
RFX7 Oryzias latipes ENSORLG00000005342 I 0.779
rfx7 Oryzias latipes ENSORLG00000008583 I 0.763
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.709
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.789
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.789
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.709
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.709
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.792
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.709
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.792
PHUM035280 Pediculus humanus PHUM035280 I 0.692
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.792
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.698
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.765
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.757
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.677
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.716
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.707
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.782
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.709
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.792
RFX7 Procavia capensis ENSPCAG00000004974 I 0.792
RFX5 Procavia capensis ENSPCAG00000011056 I 0.709
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.791
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.709
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.709
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.792
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.792
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.710
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.659
A_01977 Schistosoma haematobium A_01977 I 0.706
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.695
Smp_040350 Schistosoma mansoni Smp_040350 I 0.706
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.695
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.705
SINV24627 Solenopsis invicta SINV24627 I 0.699
RFX5 Sorex araneus ENSSARG00000000750 I 0.710
RFX7 Sorex araneus ENSSARG00000010801 I 0.787
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.722
RFX7 Sus scrofa ENSSSCG00000004603 I 0.690
RFX5 Sus scrofa ENSSSCG00000006625 I 0.709
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.694
TsM_000553100 Taenia solium TsM_000553100 I 0.704
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.787
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.718
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.770
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.756
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.792
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.665
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.689
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.718
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.752
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.770
TC008959 Tribolium castaneum TC008959 I 0.694
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.709
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.683
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.709
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.790
Tal_R011248 Tyto alba Tal_R011248 I 0.688
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.792
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.702
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.792
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.715
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.760
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.779
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.716
L798_03377 Zootermopsis nevadensis L798_03377 I 0.700