ENSPPYG00000006502 (Pongo abelii)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPPYG00000006502 T318458_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.793 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.793 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.793 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.793 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.620
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.620
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.620
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.620
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.620
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.620
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.620
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.620
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.620
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.620
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.620
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.620
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.620
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.620
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000007373 RFX 8 86

Links

Other RFX family TFs
Other Pongo abelii TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.000
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.000
L596_g14532 Steinernema carpocapsae L596_g14532 I 0.000
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.000
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.000
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.000
L596_g14537 Steinernema carpocapsae L596_g14537 I 0.000
L596_g14533 Steinernema carpocapsae L596_g14533 I 0.000
L596_g14536 Steinernema carpocapsae L596_g14536 I 0.000
L596_g14541 Steinernema carpocapsae L596_g14541 N 0.000
L889_g6692 Steinernema feltiae L889_g6692 I 0.000
L889_g8187 Steinernema feltiae L889_g8187 I 0.000
L889_g8185 Steinernema feltiae L889_g8185 I 0.000
L889_g6804 Steinernema feltiae L889_g6804 I 0.000
L889_g6803 Steinernema feltiae L889_g6803 N 0.000
L889_g6798 Steinernema feltiae L889_g6798 I 0.000
L889_g6694 Steinernema feltiae L889_g6694 I 0.000
L889_g6695 Steinernema feltiae L889_g6695 I 0.000
L889_g6797 Steinernema feltiae L889_g6797 I 0.000
L889_g6799 Steinernema feltiae L889_g6799 I 0.000
L889_g6792 Steinernema feltiae L889_g6792 I 0.000
L893_g27943 Steinernema glaseri L893_g27943 N 0.000
L893_g27935 Steinernema glaseri L893_g27935 N 0.000
L893_g27930 Steinernema glaseri L893_g27930 I 0.000
L893_g18993 Steinernema glaseri L893_g18993 I 0.000
L893_g18992 Steinernema glaseri L893_g18992 I 0.000
L898_g19021 Steinernema monticolum L898_g19021 I 0.000
L898_g12799 Steinernema monticolum L898_g12799 I 0.000
L898_g21763 Steinernema monticolum L898_g21763 I 0.000
L898_g2943 Steinernema monticolum L898_g2943 N 0.000
L898_g2944 Steinernema monticolum L898_g2944 N 0.000
L898_g3512 Steinernema monticolum L898_g3512 I 0.000
L898_g3515 Steinernema monticolum L898_g3515 I 0.000
L898_g4012 Steinernema monticolum L898_g4012 I 0.000
L898_g4013 Steinernema monticolum L898_g4013 I 0.000
L898_g4016 Steinernema monticolum L898_g4016 N 0.000
L898_g4018 Steinernema monticolum L898_g4018 N 0.000
L898_g19019 Steinernema monticolum L898_g19019 I 0.000
L898_g19014 Steinernema monticolum L898_g19014 I 0.000
L898_g19012 Steinernema monticolum L898_g19012 I 0.000
L892_g10840 Steinernema scapterisci L892_g10840 N 0.000
L892_g2781 Steinernema scapterisci L892_g2781 I 0.000
L892_g2780 Steinernema scapterisci L892_g2780 I 0.000
L892_g14824 Steinernema scapterisci L892_g14824 N 0.000
L892_g14818 Steinernema scapterisci L892_g14818 I 0.000
L892_g14817 Steinernema scapterisci L892_g14817 I 0.000
L892_g14814 Steinernema scapterisci L892_g14814 N 0.000
L892_g10843 Steinernema scapterisci L892_g10843 I 0.000
L892_g10842 Steinernema scapterisci L892_g10842 I 0.000