Rfx5 (Rattus norvegicus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSRNOG00000021012 T318489_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.790 0.987
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.790 0.987
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.790 0.987
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.790 0.987
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.790 0.987
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.790 0.987
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.790 0.987
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.790 0.987
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.790 0.987
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.790 0.987
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.790 0.987
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.790 0.987
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.790 0.987
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.790 0.987
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.790 0.987
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000060480 RFX 88 167

Links

Other RFX family TFs
Other Rattus norvegicus TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.000
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.000
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.000
SPL13A Arabidopsis thaliana AT5G50570 I 0.000
SPL13A Arabidopsis thaliana AT5G50670 D 0.000
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.000
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.000
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.000
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.000
Bo3g024180 Brassica oleracea Bo3g024180 I 0.000
Bo9g097630 Brassica oleracea Bo9g097630 I 0.000
Bra022766 Brassica rapa Bra022766 I 0.000
PK02140.1 Cannabis sativa PK02140.1 I 0.000
PK14243.1 Cannabis sativa PK14243.1 N 0.000
PK19500.1 Cannabis sativa PK19500.1 I 0.000
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.000
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.000
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.000
Ca_01426 Cicer arietinum Ca_01426 I 0.000
Ca_05711 Cicer arietinum Ca_05711 I 0.000
Cla002666 Citrullus lanatus Cla002666 I 0.000
Cla004156 Citrullus lanatus Cla004156 I 0.000
Cla019579 Citrullus lanatus Cla019579 I 0.000
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.000
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.000
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.000
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.000
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.000
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.000
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.000
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.000
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.000
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.000
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.000
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.000
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.000
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.000
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.000
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.000
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.000
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.000
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.000
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.000
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.000
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.000
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.000
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.000
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.000
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.000
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.000
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.000
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.000
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.000
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.000
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.000
mgf003797m Mimulus guttatus mgf003797m I 0.000
mgf010913m Mimulus guttatus mgf010913m I 0.000
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.000
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.000
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.000
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.000
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.000
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.000
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.000
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.000
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.000
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.000
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.000
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.000
OBART01G42150 Oryza barthii OBART01G42150 I 0.000
OBART09G15750 Oryza barthii OBART09G15750 I 0.000
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.000
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.000
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.000
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.000
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.000
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.000
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.000
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.000
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.000
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.000
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.000
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.000
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.000
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.000
OPUNC09G14110 Oryza punctata OPUNC09G14110 N 0.000
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.000
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N 0.000
OS01G0922600 Oryza sativa OS01G0922600 I 0.000
SPL16 Oryza sativa OS08G0531600 I 0.000
SPL18 Oryza sativa OS09G0507100 I 0.000
SPL19 Oryza sativa OS11G0496600 I 0.000
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.000
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.000
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.000
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.000
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.000
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.000
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.000
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.000
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.000
Pm024528 Prunus mume Pm024528 I 0.000
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.000
29929.m004627 Ricinus communis 29929.m004627 I 0.000
30147.m014478 Ricinus communis 30147.m014478 I 0.000
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.000
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.000
Si001804m.g Setaria italica Si001804m.g I 0.000
Si013747m.g Setaria italica Si013747m.g N 0.000
Si026656m.g Setaria italica Si026656m.g I 0.000
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.000
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.000
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.000
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.000
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.000
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.000
TCM_008671 Theobroma cacao TCM_008671 I 0.000
TCM_014668 Theobroma cacao TCM_014668 I 0.000
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.000
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.000
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.000
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.000
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.000
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.000
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.000