ENSSTOG00000013246 (Ictidomys tridecemlineatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSSTOG00000013246 T318517_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.790 0.987
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.790 0.987
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.790 0.987
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.790 0.987
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.790 0.987
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.790 0.987
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.790 0.987
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.790 0.987
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.790 0.987
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.790 0.987
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.790 0.987
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.790 0.987
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.790 0.987
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.790 0.987
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.790 0.987
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.712 0.633
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.712 0.633
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.712 0.633
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.712 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000011872 RFX 89 168

Links

Other RFX family TFs
Other Ictidomys tridecemlineatus TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.712
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.699
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.712
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.711
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.707
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.718
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.717
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.707
RFX7 Bos taurus ENSBTAG00000000565 I 0.712
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.691
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.699
Aan_R011989 Calypte anna Aan_R011989 I 0.707
RFX7 Canis familiaris ENSCAFG00000016029 I 0.712
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.712
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.712
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.712
rfx7 Danio rerio ENSDARG00000077237 I 0.720
RFX7 Danio rerio ENSDARG00000103691 I 0.718
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.713
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.000
RFX7 Echinops telfairi ENSETEG00000015037 I 0.692
RFX7 Equus caballus ENSECAG00000002379 I 0.707
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.699
RFX7 Felis catus ENSFCAG00000029408 I 0.713
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.712
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.704
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.718
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.718
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.697
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.707
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.000
RFX7 Homo sapiens ENSG00000181827 D 0.712
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.000
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.712
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.717
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.712
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.706
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.706
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.712
RFX7 Microcebus murinus ENSMICG00000000614 I 0.000
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.712
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.712
Rfx7 Mus musculus ENSMUSG00000037674 D 0.712
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.705
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.707
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.712
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.718
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.696
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.712
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.712
rfx7 Oryzias latipes ENSORLG00000008583 I 0.698
RFX7 Oryzias latipes ENSORLG00000005342 I 0.718
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.709
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.709
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.712
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.712
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.712
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.713
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.692
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.000
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.704
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.712
RFX7 Procavia capensis ENSPCAG00000004974 I 0.712
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.711
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.712
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.712
RFX7 Sorex araneus ENSSARG00000010801 I 0.706
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.695
RFX7 Sus scrofa ENSSSCG00000004603 I 0.000
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.707
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.745
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.712
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.691
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.712
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.712
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.692
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.745
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.714
Tal_R011248 Tyto alba Tal_R011248 I 0.000
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.712
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.711
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.718
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.692