RFX7 (Tupaia belangeri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTBEG00000014637 T318524_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.684 0.547
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.684 0.547
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.684 0.547
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.684 0.547
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.656 0.358
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.656 0.358
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.656 0.358
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.656 0.358
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.656 0.358
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.656 0.358
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.656 0.358
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.656 0.358
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.656 0.358
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.656 0.358
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.656 0.358
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.656 0.358
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.656 0.358
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.656 0.358
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.656 0.358
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000012703 RFX 8 80

Links

Other RFX family TFs
Other Tupaia belangeri TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00478 Aquilegia coerulea Aquca_010_00478 N 0.000
PK13108.1 Cannabis sativa PK13108.1 N 0.000
evm.TU.supercontig_6.108 Carica papaya evm.TU.supercontig_6.108 N 0.000
Cla014744 Citrullus lanatus Cla014744 N 0.000
Cucsa.127390 Cucumis sativus Cucsa.127390 N 0.000
Cucsa.201400 Cucumis sativus Cucsa.201400 N 0.000
Eucgr.I02451 Eucalyptus grandis Eucgr.I02451 N 0.000
gene14780-v1.0-hybrid Fragaria vesca gene14780-v1.0-hybrid N 0.000
Gorai.008G068100 Gossypium raimondii Gorai.008G068100 N 0.000
Gorai.003G015400 Gossypium raimondii Gorai.003G015400 N 0.000
Lus10041740.g Linum usitatissimum Lus10041740.g N 0.000
Lus10024014.g Linum usitatissimum Lus10024014.g N 0.000
chr3.CM0127.460.nc Lotus japonicus chr3.CM0127.460.nc N 0.000
cassava35611.valid.m1 Manihot esculenta cassava35611.valid.m1 N 0.000
cassava18797.valid.m1 Manihot esculenta cassava18797.valid.m1 N 0.000
mgf021185m Mimulus guttatus mgf021185m N 0.000
POPTR_0007s12760 Populus trichocarpa POPTR_0007s12760 N 0.000
POPTR_0005s12520 Populus trichocarpa POPTR_0005s12520 N 0.000
Pm026616 Prunus mume Pm026616 N 0.000
PRUPE_ppa003124mg Prunus persica PRUPE_ppa003124mg N 0.000
29634.m002156 Ricinus communis 29634.m002156 N 0.000
SapurV1A.0254s0130 Salix purpurea SapurV1A.0254s0130 N 0.000
SapurV1A.1131s0040 Salix purpurea SapurV1A.1131s0040 N 0.000
SapurV1A.4211s0010 Salix purpurea SapurV1A.4211s0010 N 0.000
TCM_000399 Theobroma cacao TCM_000399 N 0.000
VIT_04s0023g01660 Vitis vinifera VIT_04s0023g01660 N 0.000