Afo_R007667 (Aptenodytes forsteri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Afo_R007667 T318941_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.761 0.823
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.761 0.823
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.761 0.823
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.761 0.823
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.761 0.823
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.761 0.823
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.761 0.823
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.761 0.823
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.761 0.823
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.761 0.823
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.761 0.823
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.761 0.823
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.761 0.823
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.761 0.823
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.761 0.823
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.712 0.658
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.712 0.658
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.712 0.658
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.712 0.658
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R007667 RFX 41 119

Links

Other RFX family TFs
Other Aptenodytes forsteri TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.672
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.772
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.712
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.707
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.784
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.656
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.656
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.707
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.712
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.711
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.771
AALB008384 Anopheles albimanus AALB008384 I 0.674
AARA004226 Anopheles arabiensis AARA004226 I 0.674
AATE016751 Anopheles atroparvus AATE016751 I 0.674
ACHR008891 Anopheles christyi ACHR008891 I 0.674
ACOM036649 Anopheles coluzzii ACOM036649 I 0.674
ACUA017169 Anopheles culicifacies ACUA017169 I 0.674
ADAC008404 Anopheles darlingi ADAC008404 I 0.674
ADIR010232 Anopheles dirus ADIR010232 I 0.674
AEPI006624 Anopheles epiroticus AEPI006624 I 0.674
AFAF011654 Anopheles farauti AFAF011654 I 0.676
AFUN011072 Anopheles funestus AFUN011072 I 0.674
AGAP013226 Anopheles gambiae AGAP013226 I 0.674
AMEC002251 Anopheles melas AMEC002251 I 0.674
AMEM009524 Anopheles merus AMEM009524 I 0.674
AMIN003942 Anopheles minimus AMIN003942 I 0.674
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.674
ASIS020285 Anopheles sinensis ASIS020285 I 0.674
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.674
GB49419 Apis mellifera GB49419 I 0.683
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.715
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.756
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.716
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.717
ACEP24602 Atta cephalotes ACEP24602 I 0.683
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.668
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.761
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.712
RFX7 Bos taurus ENSBTAG00000000565 I 0.712
RFX5 Bos taurus ENSBTAG00000017580 I 0.761
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.699
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.707
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.761
Aan_R010941 Calypte anna Aan_R010941 I 0.778
Aan_R011989 Calypte anna Aan_R011989 I 0.715
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.670
RFX5 Canis familiaris ENSCAFG00000012661 I 0.761
RFX7 Canis familiaris ENSCAFG00000016029 I 0.712
CapteG131555 Capitella teleta CapteG131555 I 0.684
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.712
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.761
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.700
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.658
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.761
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.712
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.712
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.757
CLEC011984 Cimex lectularius CLEC011984 I 0.669
csin102559 Clonorchis sinensis csin102559 I 0.700
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.676
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.672
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.672
KGM_16732 Danaus plexippus KGM_16732 I 0.676
rfx5 Danio rerio ENSDARG00000063258 I 0.757
rfx7 Danio rerio ENSDARG00000077237 I 0.712
RFX7 Danio rerio ENSDARG00000103691 I 0.716
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.686
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.670
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.713
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.761
GF16654 Drosophila ananassae FBgn0093675 I 0.676
GG10435 Drosophila erecta FBgn0102744 I 0.676
GH18082 Drosophila grimshawi FBgn0125550 I 0.675
CG9727 Drosophila melanogaster FBgn0037445 I 0.676
GI24583 Drosophila mojavensis FBgn0147305 I 0.676
GL22063 Drosophila persimilis FBgn0159655 I 0.676
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.676
GM10553 Drosophila sechellia FBgn0165499 I 0.676
GD19544 Drosophila simulans FBgn0191039 I 0.676
GJ22650 Drosophila virilis FBgn0209754 I 0.676
GK13786 Drosophila willistoni FBgn0215794 I 0.676
GE24099 Drosophila yakuba FBgn0241238 I 0.676
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.689
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.689
RFX5 Echinops telfairi ENSETEG00000013503 I 0.761
RFX7 Echinops telfairi ENSETEG00000015037 I 0.700
RFX7 Equus caballus ENSECAG00000002379 I 0.714
RFX5 Equus caballus ENSECAG00000024774 I 0.761
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.744
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.707
D915_00887 Fasciola hepatica D915_00887 I 0.651
RFX5 Felis catus ENSFCAG00000005568 I 0.761
RFX7 Felis catus ENSFCAG00000029408 I 0.714
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.777
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.712
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.705
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.716
RFX5 Gallus gallus ENSGALG00000000836 I 0.789
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.716
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.704
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.777
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.715
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.761
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.683
HMEL011744 Heliconius melpomene HMEL011744 I 0.677
RFX5 Homo sapiens ENSG00000143390 D 0.761
RFX7 Homo sapiens ENSG00000181827 D 0.712
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.689
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.672
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.690
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.690
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.691
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.763
ISCW001129 Ixodes scapularis ISCW001129 I 0.657
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.712
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.759
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.718
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.685
LotgiG138119 Lottia gigantea LotgiG138119 I 0.678
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.712
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.761
LCUP014592 Lucilia cuprina LCUP014592 I 0.677
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.715
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.761
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.761
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.715
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.663
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.762
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.785
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.712
MCINX003210 Melitaea cinxia MCINX003210 I 0.677
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.712
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.685
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.656
MDOA009335 Musca domestica MDOA009335 I 0.677
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.712
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.761
Rfx5 Mus musculus ENSMUSG00000005774 I 0.759
Rfx7 Mus musculus ENSMUSG00000037674 D 0.712
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.772
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.713
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.772
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.711
NV23037 Nasonia vitripennis NV23037 I 0.680
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.686
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.712
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.761
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.664
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.701
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.665
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.767
T265_11740 Opisthorchis viverrini T265_11740 I 0.700
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.760
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.700
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.716
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.712
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.761
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.712
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.757
RFX7 Oryzias latipes ENSORLG00000005342 I 0.716
rfx7 Oryzias latipes ENSORLG00000008583 I 0.699
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.761
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.713
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.713
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.761
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.761
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.712
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.761
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.712
PHUM035280 Pediculus humanus PHUM035280 I 0.683
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.712
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.772
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.710
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.697
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.761
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.770
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.708
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.761
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.712
RFX7 Procavia capensis ENSPCAG00000004974 I 0.712
RFX5 Procavia capensis ENSPCAG00000011056 I 0.778
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.710
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.761
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.759
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.712
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.712
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.762
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.651
A_01977 Schistosoma haematobium A_01977 I 0.689
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.683
Smp_040350 Schistosoma mansoni Smp_040350 I 0.689
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.683
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.700
SINV24627 Solenopsis invicta SINV24627 I 0.683
RFX5 Sorex araneus ENSSARG00000000750 I 0.761
RFX7 Sorex araneus ENSSARG00000010801 I 0.715
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.699
RFX5 Sus scrofa ENSSSCG00000006625 I 0.761
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.664
TsM_000553100 Taenia solium TsM_000553100 I 0.689
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.715
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.762
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.714
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.700
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.712
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.686
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.665
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.762
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.691
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.714
TC008959 Tribolium castaneum TC008959 I 0.680
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.761
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.654
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.761
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.715
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.712
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.767
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.711
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.777
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.694
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.716
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.761
L798_03377 Zootermopsis nevadensis L798_03377 I 0.680