estExt_fgenesh2_pg.C_10713 (Neurospora discreta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 estExt_fgenesh2_pg.C_10713 T319033_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.674 0.500
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.674 0.500
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.674 0.500
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.674 0.500
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.674 0.500
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.660 0.449
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.653 0.397
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.653 0.397
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.653 0.410
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.652 0.397
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.652 0.397
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.652 0.397
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.652 0.397
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.652 0.397
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.651 0.397
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.651 0.397
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.651 0.385
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.651 0.385
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.651 0.385
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.651 0.397
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.651 0.397
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.651 0.397
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.651 0.397
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.651 0.397
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.651 0.397
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.651 0.397
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.651 0.397
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.651 0.397
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.651 0.397
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.651 0.385
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.651 0.385
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.651 0.385
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.651 0.385
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.651 0.385
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.651 0.385
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.651 0.385
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.651 0.385
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.651 0.385
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.651 0.385
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.651 0.385
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_10713 RFX 311 388

Links

Other RFX family TFs
Other Neurospora discreta TFs

410 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_005560 Acremonium chrysogenum ACRE_005560 I 0.000
AOL_s00097g503 Arthrobotrys oligospora AOL_s00097g503 I 0.000
fgenesh1_pg.00007_#_1 Aspergillus carbonarius fgenesh1_pg.00007_#_1 I 0.000
ACLA_020150 Aspergillus clavatus CADACLAG00002323 I 0.000
CADAFLAG00001220 Aspergillus flavus CADAFLAG00001220 I 0.000
ANIA_00863 Aspergillus nidulans CADANIAG00001795 I 0.000
CADANGAG00001338 Aspergillus niger CADANGAG00001338 I 0.000
CADAORAG00003101 Aspergillus oryzae CADAORAG00003101 I 0.000
EURHEDRAFT_374072 Aspergillus ruber EURHEDRAFT_374072 I 0.000
ATEG_00829 Aspergillus terreus CADATEAG00009031 I 0.000
M437DRAFT_59322 Aureobasidium melanogenum M437DRAFT_59322 I 0.000
M438DRAFT_273042 Aureobasidium pullulans M438DRAFT_273042 I 0.000
AUEXF2481DRAFT_31334 Aureobasidium subglaciale AUEXF2481DRAFT_31334 I 0.000
BAUCODRAFT_78329 Baudoinia compniacensis BAUCODRAFT_78329 I 0.000
BBA_09506 Beauveria bassiana BBA_09506 I 0.000
COCC4DRAFT_76368 Bipolaris maydis COCC4DRAFT_76368 I 0.000
COCMIDRAFT_109395 Bipolaris oryzae COCMIDRAFT_109395 I 0.000
COCSADRAFT_165419 Bipolaris sorokiniana COCSADRAFT_165419 I 0.000
COCVIDRAFT_107887 Bipolaris victoriae COCVIDRAFT_107887 I 0.000
COCCADRAFT_110079 Bipolaris zeicola COCCADRAFT_110079 I 0.000
BDDG_02902 Blastomyces dermatitidis BDDG_02902 I 0.000
BGHDH14_bgh01602 Blumeria graminis BGHDH14_bgh01602 I 0.000
Bcin03g00870 Botrytis cinerea Bcin03g00870 I 0.000
A1O1_02309 Capronia coronata A1O1_02309 I 0.000
A1O3_00720 Capronia epimyces A1O3_00720 I 0.000
PV04_05800 Capronia semiimmersa PV04_05800 I 0.000
CHGG_10452 Chaetomium globosum CHGG_10452 I 0.000
CTHT_0015780 Chaetomium thermophilum CTHT_0015780 I 0.000
Z519_07440 Cladophialophora bantiana Z519_07440 I 0.000
G647_09514 Cladophialophora carrionii G647_09514 I 0.000
PV07_04527 Cladophialophora immunda PV07_04527 I 0.000
A1O5_12837 Cladophialophora psammophila A1O5_12837 I 0.000
A1O7_05347 Cladophialophora yegresii A1O7_05347 I 0.000
CPUR_06638 Claviceps purpurea CPUR_06638 I 0.000
CIMG_03219 Coccidioides immitis CIMG_03219 I 0.000
CFIO01_10160 Colletotrichum fioriniae CFIO01_10160 I 0.000
GLRG_09934 Colletotrichum graminicola GLRG_09934 I 0.000
CH063_11852 Colletotrichum higginsianum CH063_11852 I 0.000
Cob_04720 Colletotrichum orbiculare Cob_04720 I 0.000
CSUB01_09634 Colletotrichum sublineola CSUB01_09634 I 0.000
CCM_08972 Cordyceps militaris CCM_08972 I 0.000
e_gw1.2.1060.1 Cryphonectria parasitica e_gw1.2.1060.1 I 0.000
HMPREF1541_01212 Cyphellophora europaea HMPREF1541_01212 I 0.000
H072_5069 Dactylellina haptotyla H072_5069 I 0.000
DRE_03471 Drechslerella stenobrocha DRE_03471 I 0.000
EPUS_02342 Endocarpon pusillum EPUS_02342 I 0.000
A1O9_03650 Exophiala aquamarina A1O9_03650 I 0.000
HMPREF1120_02454 Exophiala dermatitidis HMPREF1120_02454 I 0.000
PV10_07375 Exophiala mesophila PV10_07375 I 0.000
PV06_01794 Exophiala oligosperma PV06_01794 I 0.000
PV11_02510 Exophiala sideris PV11_02510 I 0.000
PV08_02614 Exophiala spinifera PV08_02614 I 0.000
PV05_06488 Exophiala xenobiotica PV05_06488 I 0.000
Z517_03954 Fonsecaea pedrosoi Z517_03954 I 0.000
FFUJ_01774 Fusarium fujikuroi FFUJ_01774 I 0.000
FGRRES_01564 Fusarium graminearum FGRRES_01564 I 0.000
FOXG_11142 Fusarium oxysporum FOXG_11142 I 0.000
FPSE_00770 Fusarium pseudograminearum FPSE_00770 I 0.000
NechaG89712 Fusarium solani NechaG89712 I 0.000
GGTG_11131 Gaeumannomyces graminis GGTG_11131 I 0.000
CMQ_6901 Grosmannia clavigera CMQ_6901 I 0.000
MGG_02377 Magnaporthe oryzae MGG_02377 I 0.000
MAPG_00807 Magnaporthe poae MAPG_00807 I 0.000
MAC_05766 Metarhizium acridum MAC_05766 I 0.000
MAM_04090 Metarhizium album MAM_04090 I 0.000
MANI_026774 Metarhizium anisopliae MANI_026774 I 0.000
MBR_06802 Metarhizium brunneum MBR_06802 I 0.000
MGU_04563 Metarhizium guizhouense MGU_04563 I 0.000
MAJ_06040 Metarhizium majus MAJ_06040 I 0.000
X797_000021 Metarhizium robertsii X797_000021 I 0.000
MCYG_06533 Microsporum canis MCYG_06533 I 0.000
MGYG_07011 Microsporum gypseum MGYG_07011 I 0.000
MYCTH_2312847 Myceliophthora thermophila MYCTH_2312847 I 0.000
estExt_fgenesh1_pg.C_140357 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_140357 I 0.000
e_gw1.2.1218.1 Mycosphaerella graminicola e_gw1.2.1218.1 I 0.000
fgenesh1_pm.sca_8_chr1_1_0000149 Nectria haematococca fgenesh1_pm.sca_8_chr1_1_0000149 I 0.000
NFIA_010190 Neosartorya fischeri CADNFIAG00001692 I 0.000
vad-5 Neurospora crassa NCU06799 D 0.000
estExt_fgenesh3_pm.C_110174 Neurospora discreta estExt_fgenesh3_pm.C_110174 I 0.000
NEUTE1DRAFT_65511 Neurospora tetrasperma NEUTE1DRAFT_65511 I 0.000
OIDMADRAFT_170049 Oidiodendron maius OIDMADRAFT_170049 I 0.000
F503_00341 Ophiostoma piceae uamh F503_00341 I 0.000
PABG_02378 Paracoccidioides brasiliensis PABG_02378 I 0.000
Pc06g01000 Penicillium chrysogenum Pc06g01000 I 0.000
PDIP_05690 Penicillium digitatum PDIP_05690 I 0.000
PEX1_049440 Penicillium expansum PEX1_049440 I 0.000
PITC_097010 Penicillium italicum PITC_097010 I 0.000
PMAA_073640 Penicillium marneffei PMAA_073640 I 0.000
PDE_00436 Penicillium oxalicum PDE_00436 I 0.000
PCH_Pc06g01000 Penicillium rubens PCH_Pc06g01000 I 0.000
U727_00432520171 Penicillium solitum U727_00432520171 I 0.000
PFICI_09104 Pestalotiopsis fici PFICI_09104 I 0.000
PODANS_3_9460 Podospora anserina PODANS_3_9460 I 0.000
MYCFIDRAFT_114915 Pseudocercospora fijiensis MYCFIDRAFT_114915 I 0.000
GMDG_03461 Pseudogymnoascus destructans GMDG_03461 I 0.000
V499_01915 Pseudogymnoascus pannorum V499_01915 I 0.000
PTT_08053 Pyrenophora teres PTT_08053 I 0.000
PTRG_10536 Pyrenophora triticirepentis PTRG_10536 I 0.000
Z518_03644 Rhinocladiella mackenziei Z518_03644 I 0.000
SS1G_00816 Sclerotinia sclerotiorum SS1G_00816 I 0.000
SMAC_06786 Sordaria macrospora SMAC_06786 I 0.000
SEPMUDRAFT_39628 Sphaerulina musiva SEPMUDRAFT_39628 I 0.000
SPBR_00049 Sporothrix brasiliensis SPBR_00049 I 0.000
HMPREF1624_07895 Sporothrix schenckii HMPREF1624_07895 I 0.000
S40288_02059 Stachybotrys chartarum S40288_02059 I 0.000
S40285_07076 Stachybotrys chlorohalonata S40285_07076 I 0.000
PMAA_073640 Talaromyces marneffei PMAA_073640 I 0.000
TSTA_094090 Talaromyces stipitatus TSTA_094090 I 0.000
THITE_75868 Thielavia terrestris THITE_75868 I 0.000
VHEMI05723 Torrubiella hemipterigena VHEMI05723 I 0.000
TRIATDRAFT_141302 Trichoderma atroviride TRIATDRAFT_141302 I 0.000
TRIREDRAFT_22535 Trichoderma reesei TRIREDRAFT_22535 I 0.000
TRIVIDRAFT_65142 Trichoderma virens TRIVIDRAFT_65142 I 0.000
TEQG_04963 Trichophyton equinum TEQG_04963 I 0.000
H101_05509 Trichophyton interdigitale H101_05509 I 0.000
TESG_04779 Trichophyton tonsurans TESG_04779 I 0.000
GSTUM_00004217001 Tuber melanosporum GSTUM_00004217001 I 0.000
UV8b_462 Ustilaginoidea virens UV8b_462 I 0.000
PV09_03993 Verruconis gallopava PV09_03993 I 0.000
VDBG_05795 Verticillium albo atrum VDBG_05795 I 0.000
VDBG_05795 Verticillium alfalfae VDBG_05795 I 0.000
VDAG_07729 Verticillium dahliae VDAG_07729 I 0.000
Mycgr3G36968 Zymoseptoria tritici Mycgr3G36968 I 0.000