fgenesh2_pg.scaffold_503000011 (Branchiostoma floridae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 fgenesh2_pg.scaffold_503000011 T319042_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.653 0.278
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.650 0.291
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.650 0.291
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.650 0.291
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.650 0.291
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.650 0.291
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.650 0.291
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_503000011 RFX 127 206

Links

Other RFX family TFs
Other Branchiostoma floridae TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.650
Alligator_sinensis_CCG004973.1 Alligator sinensis Alligator_sinensis_CCG004973.1 N 0.719
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.650
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.650
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.650
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.650
ACEP25962 Atta cephalotes ACEP25962 N 0.674
ENSP00000335044-D1 Bos grunniens ENSP00000335044-D1 N 0.717
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.650
ARID2 Bos taurus ENSBTAG00000011087 N 0.717
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.650
CBG00885 Caenorhabditis briggsae CBG00885 I 0.651
daf-19 Caenorhabditis elegans WBGene00000914 D 0.653
Aan_R008662 Calypte anna Aan_R008662 I 0.650
Cflo_11031--XP_001120115.1_APIME Camponotus floridanus Cflo_11031--XP_001120115.1_APIME N 0.671
RFX4 Canis familiaris ENSCAFG00000001813 I 0.650
ARID2 Canis familiaris ENSCAFG00000009335 N 0.718
CapteG183181 Capitella teleta CapteG183181 I 0.652
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.650
Cmyd_10012613 Chelonia mydas Cmyd_10012613 N 0.719
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.650
ENSCSAG00000006749 Chlorocebus sabaeus ENSCSAG00000006749 N 0.717
CLEC001081 Cimex lectularius CLEC001081 N 0.689
ENSCING00000006777 Ciona intestinalis ENSCING00000006777 N 0.674
rfx4 Danio rerio ENSDARG00000026395 I 0.650
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.652
ARID2 Dasypus novemcinctus ENSDNOG00000014939 N 0.717
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.651
RFX4 Equus caballus ENSECAG00000005111 I 0.650
ARID2 Equus caballus ENSECAG00000019032 N 0.717
ARID2 Felis catus ENSFCAG00000012831 N 0.718
RFX4 Felis catus ENSFCAG00000015618 I 0.650
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.650
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.650
RFX4 Gallus gallus ENSGALG00000012647 I 0.650
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.650
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.650
Hsal_11764--XP_001120115.1_APIME Harpegnathos saltator Hsal_11764--XP_001120115.1_APIME N 0.673
HelroG195033 Helobdella robusta HelroG195033 N 0.661
RFX4 Homo sapiens ENSG00000111783 D 0.650
ARID2 Homo sapiens ENSG00000189079 N 0.718
ISCW014107 Ixodes scapularis ISCW014107 N 0.686
ENSLACG00000022645 Latimeria chalumnae ENSLACG00000022645 I 0.654
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.650
ENSLACG00000005013 Latimeria chalumnae ENSLACG00000005013 N 0.711
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.650
LotgiG113173 Lottia gigantea LotgiG113173 I 0.652
ARID2 Loxodonta africana ENSLAFG00000004415 N 0.717
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.650
ENSMMUP00000020998 Macaca fascicularis ENSMMUP00000020998 N 0.717
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.650
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.650
ARID2 Macaca mulatta ENSMMUG00000015962 N 0.717
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.650
ARID2 Microcebus murinus ENSMICG00000001487 N 0.717
ARID2 Monodelphis domestica ENSMODG00000018527 N 0.718
Rfx4 Mus musculus ENSMUSG00000020037 D 0.650
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.650
Myotis_brandtii_ARID2_10029493 Myotis brandtii Myotis_brandtii_ARID2_10029493 N 0.718
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.650
ARID2 Myotis lucifugus ENSMLUG00000006908 N 0.718
NEMVEDRAFT_v1g122918 Nematostella vectensis NEMVEDRAFT_v1g122918 I 0.656
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.650
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.650
Ocbimv22031898m.g Octopus bimaculoides Ocbimv22031898m.g N 0.674
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.650
ENSOANG00000010834 Ornithorhynchus anatinus ENSOANG00000010834 N 0.719
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.650
ARID2 Oryctolagus cuniculus ENSOCUG00000013306 N 0.715
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.650
ARID2 Otolemur garnettii ENSOGAG00000024418 N 0.717
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.650
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.650
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.650
ENSPANG00000015334 Papio anubis ENSPANG00000015334 N 0.717
PHUM060660 Pediculus humanus PHUM060660 N 0.677
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.650
ENSPMAG00000008289 Petromyzon marinus ENSPMAG00000008289 N 0.689
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.650
ARID2 Pteropus vampyrus ENSPVAG00000009834 N 0.717
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.650
RSKR_0000997500 Rhabditophanes kr3021 RSKR_0000997500 N 0.658
Sakowv30024145m.g Saccoglossus kowalevskii Sakowv30024145m.g N 0.744
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.651
PTSG_01032 Salpingoeca rosetta PTSG_01032 I 0.651
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.650
SINV17530 Solenopsis invicta SINV17530 N 0.673
ARID2 Sorex araneus ENSSARG00000007415 N 0.697
SPU_026159 Strongylocentrotus purpuratus SPU_026159 N 0.694
ENSSSCG00000030685 Sus scrofa ENSSSCG00000030685 N 0.717
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.650
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.653
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.650
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.650
Tal_R007164 Tyto alba Tal_R007164 N 0.717
ARID2 Vicugna pacos ENSVPAG00000004779 N 0.717
ENSXMAG00000006636 Xiphophorus maculatus ENSXMAG00000006636 N 0.690