Ocbimv22026231m.g (Octopus bimaculoides)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Ocbimv22026231m.g T319051_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.677 0.537
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.660 0.500
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.660 0.500
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.660 0.500
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.660 0.500
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.660 0.500
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.660 0.500
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22026231m.p RFX 62 115

Links

Other RFX family TFs
Other Octopus bimaculoides TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005843 Ailuropoda melanoleuca ENSAMEG00000005843 I 0.679
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.660
ENSAPLG00000002929 Anas platyrhynchos ENSAPLG00000002929 I 0.679
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.660
RFX6 Anolis carolinensis ENSACAG00000014185 I 0.679
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.660
Afo_R005589 Aptenodytes forsteri Afo_R005589 I 0.676
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.660
ENSAMXG00000017899 Astyanax mexicanus ENSAMXG00000017899 I 0.678
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.659
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.660
ENSBTAP00000000329-D1 Bos grunniens ENSBTAP00000000329-D1 I 0.679
RFX6 Bos taurus ENSBTAG00000000264 I 0.679
fgenesh2_pg.scaffold_117000002 Branchiostoma floridae fgenesh2_pg.scaffold_117000002 I 0.706
fgenesh2_pg.scaffold_44000109 Branchiostoma floridae fgenesh2_pg.scaffold_44000109 I 0.669
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.660
Brh_R008084 Buceros rhinoceros Brh_R008084 I 0.676
BXY_1592600 Bursaphelenchus xylophilus BXY_1592600 I 0.651
RFX6 Callithrix jacchus ENSCJAG00000004349 I 0.679
Aan_R008662 Calypte anna Aan_R008662 I 0.660
Aan_R009636 Calypte anna Aan_R009636 I 0.679
RFX6 Canis familiaris ENSCAFG00000000915 I 0.679
RFX4 Canis familiaris ENSCAFG00000001813 I 0.660
CapteG108705 Capitella teleta CapteG108705 I 0.677
CapteG183181 Capitella teleta CapteG183181 I 0.656
CapteG220726 Capitella teleta CapteG220726 I 0.670
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.660
RFX6 Cavia porcellus ENSCPOG00000015023 I 0.678
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.660
ENSCSAG00000015856 Chlorocebus sabaeus ENSCSAG00000015856 I 0.679
CGI_10006760 Crassostrea gigas CGI_10006760 I 0.689
CGI_10018775 Crassostrea gigas CGI_10018775 I 0.663
rfx4 Danio rerio ENSDARG00000026395 I 0.660
rfx6 Danio rerio ENSDARG00000041702 I 0.677
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.657
RFX6 Dasypus novemcinctus ENSDNOG00000019162 I 0.679
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.657
Rfx6 Dipodomys ordii ENSDORG00000013591 I 0.679
RFX6 Echinops telfairi ENSETEG00000005677 I 0.676
ENSETEG00000007550 Echinops telfairi ENSETEG00000007550 I 0.658
RFX4 Equus caballus ENSECAG00000005111 I 0.660
RFX6 Equus caballus ENSECAG00000019804 I 0.679
RFX6 Erinaceus europaeus ENSEEUG00000001945 I 0.679
RFX4 Felis catus ENSFCAG00000015618 I 0.660
RFX6 Felis catus ENSFCAG00000018903 I 0.679
ENSFALG00000011057 Ficedula albicollis ENSFALG00000011057 I 0.679
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.660
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.660
ENSGMOG00000018155 Gadus morhua ENSGMOG00000018155 I 0.678
RFX4 Gallus gallus ENSGALG00000012647 I 0.660
RFX6 Gallus gallus ENSGALG00000014918 I 0.679
rfx6 Gasterosteus aculeatus ENSGACG00000005840 I 0.679
rfx4 Gasterosteus aculeatus ENSGACG00000011830 I 0.659
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.660
Gfo_R016155 Geospiza fortis Gfo_R016155 I 0.679
RFX6 Gorilla gorilla ENSGGOG00000006982 I 0.676
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.660
HelroG184328 Helobdella robusta HelroG184328 I 0.659
RFX4 Homo sapiens ENSG00000111783 D 0.666
RFX6 Homo sapiens ENSG00000185002 I 0.679
XP_002167174.1 Hydra magnipapillata XP_002167174.1 I 0.654
ENSSTOG00000012365 Ictidomys tridecemlineatus ENSSTOG00000012365 I 0.679
ENSSTOG00000015740 Ictidomys tridecemlineatus ENSSTOG00000015740 I 0.665
ENSLACG00000004044 Latimeria chalumnae ENSLACG00000004044 I 0.679
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.660
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.660
ENSLOCG00000017133 Lepisosteus oculatus ENSLOCG00000017133 I 0.679
LotgiG113173 Lottia gigantea LotgiG113173 I 0.663
LotgiG122187 Lottia gigantea LotgiG122187 I 0.683
RFX6 Loxodonta africana ENSLAFG00000003465 I 0.679
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.660
ENSMMUP00000022612 Macaca fascicularis ENSMMUP00000022612 I 0.679
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.660
RFX6 Macaca mulatta ENSMMUG00000017189 I 0.679
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.660
ENSMEUG00000007718 Macropus eugenii ENSMEUG00000007718 I 0.665
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.660
RFX6 Meleagris gallopavo ENSMGAG00000013368 I 0.679
ENSMICG00000009092 Microcebus murinus ENSMICG00000009092 I 0.671
RFX6 Monodelphis domestica ENSMODG00000017815 I 0.679
estExt_fgenesh2_pg.C_390014 Monosiga brevicollis estExt_fgenesh2_pg.C_390014 I 0.653
ENSMPUG00000012144 Mustela putorius furo ENSMPUG00000012144 I 0.660
ENSMPUG00000014252 Mustela putorius furo ENSMPUG00000014252 I 0.679
Rfx6 Mus musculus ENSMUSG00000019900 D 0.677
Rfx4 Mus musculus ENSMUSG00000020037 D 0.660
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.660
Myotis_brandtii_RFX6_10035596 Myotis brandtii Myotis_brandtii_RFX6_10035596 I 0.679
RFX6 Myotis lucifugus ENSMLUG00000006665 I 0.679
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.660
NEMVEDRAFT_v1g110404 Nematostella vectensis NEMVEDRAFT_v1g110404 I 0.659
NEMVEDRAFT_v1g122918 Nematostella vectensis NEMVEDRAFT_v1g122918 I 0.651
NEMVEDRAFT_v1g85569 Nematostella vectensis NEMVEDRAFT_v1g85569 I 0.670
NEMVEDRAFT_v1g96414 Nematostella vectensis NEMVEDRAFT_v1g96414 I 0.651
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.660
ENSNLEG00000013258 Nomascus leucogenys ENSNLEG00000013258 I 0.679
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.660
Ocbimv22008419m.g Octopus bimaculoides Ocbimv22008419m.g I 0.676
Ogr10888 Ophisaurus gracilis Ogr10888 I 0.679
ENSONIG00000014750 Oreochromis niloticus ENSONIG00000014750 I 0.659
ENSONIG00000015740 Oreochromis niloticus ENSONIG00000015740 I 0.679
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.660
ENSOANG00000020392 Ornithorhynchus anatinus ENSOANG00000020392 I 0.671
RFX6 Oryctolagus cuniculus ENSOCUG00000013227 I 0.679
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.660
rfx4 Oryzias latipes ENSORLG00000011114 I 0.659
ENSORLG00000018626 Oryzias latipes ENSORLG00000018626 I 0.681
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.660
RFX6 Otolemur garnettii ENSOGAG00000011937 I 0.679
ENSOARG00000008929 Ovis aries ENSOARG00000008929 I 0.679
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.660
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.660
RFX6 Pan troglodytes ENSPTRG00000018540 I 0.679
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.660
ENSPANG00000008240 Papio anubis ENSPANG00000008240 I 0.679
PHUM236330 Pediculus humanus PHUM236330 I 0.661
ENSPSIG00000008368 Pelodiscus sinensis ENSPSIG00000008368 I 0.679
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.660
ENSPFOG00000003162 Poecilia formosa ENSPFOG00000003162 I 0.679
ENSPFOG00000016523 Poecilia formosa ENSPFOG00000016523 I 0.659
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.660
ENSPPYG00000016960 Pongo abelii ENSPPYG00000016960 I 0.679
RFX4 Procavia capensis ENSPCAG00000005023 I 0.660
RFX6 Pteropus vampyrus ENSPVAG00000000614 I 0.679
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.660
Rfx4 Rattus norvegicus ENSRNOG00000051536 I 0.652
Sakowv30020492m.g Saccoglossus kowalevskii Sakowv30020492m.g I 0.678
Sakowv30020494m.g Saccoglossus kowalevskii Sakowv30020494m.g I 0.694
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.658
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.651
ENSSHAG00000009393 Sarcophilus harrisii ENSSHAG00000009393 I 0.679
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.660
RFX6 Sorex araneus ENSSARG00000012002 I 0.671
SMAR001902 Strigamia maritima SMAR001902 I 0.680
SMAR011197 Strigamia maritima SMAR011197 I 0.670
SMAR012474 Strigamia maritima SMAR012474 I 0.661
SPU_011477 Strongylocentrotus purpuratus SPU_011477 I 0.678
SPU_020781 Strongylocentrotus purpuratus SPU_020781 I 0.669
SPU_025817 Strongylocentrotus purpuratus SPU_025817 I 0.679
ENSSSCG00000000168 Sus scrofa ENSSSCG00000000168 I 0.652
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.660
RFX6 Taeniopygia guttata ENSTGUG00000011924 I 0.679
rfx6 Takifugu rubripes ENSTRUG00000008447 I 0.679
rfx4 Takifugu rubripes ENSTRUG00000008925 I 0.661
ENSTSYG00000008237 Tarsius syrichta ENSTSYG00000008237 I 0.679
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.656
tetur18g01090 Tetranychus urticae tetur18g01090 I 0.658
tetur35g00700 Tetranychus urticae tetur35g00700 I 0.677
rfx6 Tetraodon nigroviridis ENSTNIG00000009728 I 0.679
rfx4 Tetraodon nigroviridis ENSTNIG00000012137 I 0.661
TriadG51266 Trichoplax adhaerens TriadG51266 I 0.651
TriadG51678 Trichoplax adhaerens TriadG51678 I 0.651
RFX6 Tupaia belangeri ENSTBEG00000011557 I 0.673
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.660
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.660
RFX6 Tursiops truncatus ENSTTRG00000011052 I 0.679
Tal_R000797 Tyto alba Tal_R000797 I 0.676
RFX6 Vicugna pacos ENSVPAG00000002198 I 0.679
RFX4 Vicugna pacos ENSVPAG00000008521 I 0.665
rfx6.L Xenopus laevis XB-GENE-6488525 I 0.679
rfx6 Xenopus tropicalis XB-GENE-1013164 I 0.679
ENSXMAG00000001638 Xiphophorus maculatus ENSXMAG00000001638 I 0.659
ENSXMAG00000015726 Xiphophorus maculatus ENSXMAG00000015726 I 0.679