rfx5 (Xenopus tropicalis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 XB-GENE-5942579 T319084_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.758 0.810
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.758 0.810
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.758 0.810
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.758 0.810
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.758 0.810
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.758 0.810
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.758 0.810
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.758 0.810
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.758 0.810
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.758 0.810
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.758 0.810
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.758 0.810
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.758 0.810
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.758 0.810
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.758 0.810
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.715 0.696
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.715 0.696
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.715 0.696
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.715 0.696
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH64876 RFX 123 201
AAI35605 RFX 82 160

Links

Other RFX family TFs
Other Xenopus tropicalis TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_007430 Acremonium chrysogenum ACRE_007430 I 0.000
AB00218.1 Alternaria brassicicola AB00218.1 I 0.000
AOL_s00006g292 Arthrobotrys oligospora AOL_s00006g292 I 0.000
MCYG_03934 Arthroderma otae MCYG_03934 I 0.000
e_gw1.00609.29.1 Aspergillus carbonarius e_gw1.00609.29.1 I 0.000
ACLA_076150 Aspergillus clavatus CADACLAG00006696 I 0.000
CADAFLAG00010295 Aspergillus flavus CADAFLAG00010295 I 0.000
AFUA_2G17220 Aspergillus fumigatus CADAFUAG00004619 I 0.000
ANIA_09492 Aspergillus nidulans CADANIAG00000196 I 0.000
CADANGAG00004639 Aspergillus niger CADANGAG00004639 I 0.000
EURHEDRAFT_453290 Aspergillus ruber EURHEDRAFT_453290 I 0.000
ATEG_10025 Aspergillus terreus CADATEAG00003259 I 0.000
M437DRAFT_44413 Aureobasidium melanogenum M437DRAFT_44413 I 0.000
M438DRAFT_334709 Aureobasidium pullulans M438DRAFT_334709 I 0.000
AUEXF2481DRAFT_6770 Aureobasidium subglaciale AUEXF2481DRAFT_6770 I 0.000
BAUCODRAFT_86213 Baudoinia compniacensis BAUCODRAFT_86213 I 0.000
BBA_03811 Beauveria bassiana BBA_03811 I 0.000
COCC4DRAFT_56721 Bipolaris maydis COCC4DRAFT_56721 I 0.000
COCMIDRAFT_5202 Bipolaris oryzae COCMIDRAFT_5202 I 0.000
COCSADRAFT_176125 Bipolaris sorokiniana COCSADRAFT_176125 I 0.000
COCVIDRAFT_30818 Bipolaris victoriae COCVIDRAFT_30818 I 0.000
COCCADRAFT_6504 Bipolaris zeicola COCCADRAFT_6504 I 0.000
BDDG_03885 Blastomyces dermatitidis BDDG_03885 I 0.000
BGHDH14_bgh00206 Blumeria graminis BGHDH14_bgh00206 I 0.000
Bcin08g00680 Botrytis cinerea Bcin08g00680 N 0.000
PVAR5_7748 Byssochlamys spectabilis PVAR5_7748 I 0.000
PGUG_02473 Candida guilliermondii PGUG_02473 I 0.000
CLUG_01374 Candida lusitaniae CLUG_01374 I 0.000
G210_1021 Candida maltosa G210_1021 I 0.000
CANTEDRAFT_125270 Candida tenuis CANTEDRAFT_125270 I 0.000
A1O1_02953 Capronia coronata A1O1_02953 I 0.000
A1O3_05076 Capronia epimyces A1O3_05076 I 0.000
PV04_09226 Capronia semiimmersa PV04_09226 I 0.000
CHGG_05487 Chaetomium globosum CHGG_05487 I 0.000
CTHT_0071740 Chaetomium thermophilum CTHT_0071740 I 0.000
Z519_11866 Cladophialophora bantiana Z519_11866 I 0.000
G647_07623 Cladophialophora carrionii G647_07623 I 0.000
PV07_00527 Cladophialophora immunda PV07_00527 I 0.000
A1O5_01401 Cladophialophora psammophila A1O5_01401 I 0.000
A1O7_08648 Cladophialophora yegresii A1O7_08648 I 0.000
CPUR_00983 Claviceps purpurea CPUR_00983 I 0.000
CLUG_01374 Clavispora lusitaniae CLUG_01374 I 0.000
CIMG_09396 Coccidioides immitis CIMG_09396 I 0.000
CPC735_017710 Coccidioides posadasii CPC735_017710 I 0.000
estExt_fgenesh1_pg.C_10443 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_10443 I 0.000
CFIO01_07840 Colletotrichum fioriniae CFIO01_07840 I 0.000
GLRG_10519 Colletotrichum graminicola GLRG_10519 I 0.000
CH063_04661 Colletotrichum higginsianum CH063_04661 I 0.000
Cob_05419 Colletotrichum orbiculare Cob_05419 I 0.000
CSUB01_11387 Colletotrichum sublineola CSUB01_11387 I 0.000
W97_08313 Coniosporium apollinis W97_08313 I 0.000
CCM_08024 Cordyceps militaris CCM_08024 I 0.000
estExt_fgenesh1_pg.C_11081 Cryphonectria parasitica estExt_fgenesh1_pg.C_11081 I 0.000
HMPREF1541_09730 Cyphellophora europaea HMPREF1541_09730 I 0.000
H072_10443 Dactylellina haptotyla H072_10443 I 0.000
DEHA2D06490g Debaryomyces hansenii DEHA2D06490g I 0.000
DOTSEDRAFT_69682 Dothistroma septosporum DOTSEDRAFT_69682 I 0.000
DRE_00729 Drechslerella stenobrocha DRE_00729 I 0.000
EPUS_06075 Endocarpon pusillum EPUS_06075 I 0.000
EV44_g1622 Erysiphe necator EV44_g1622 I 0.000
HMPREF1120_00931 Exophiala dermatitidis HMPREF1120_00931 I 0.000
PV10_05123 Exophiala mesophila PV10_05123 I 0.000
PV11_02934 Exophiala sideris PV11_02934 I 0.000
PV08_09225 Exophiala spinifera PV08_09225 I 0.000
PV05_00394 Exophiala xenobiotica PV05_00394 I 0.000
Z517_01468 Fonsecaea pedrosoi Z517_01468 I 0.000
FGRRES_02743 Fusarium graminearum FGRRES_02743 I 0.000
FOXG_10299 Fusarium oxysporum FOXG_10299 I 0.000
FPSE_11115 Fusarium pseudograminearum FPSE_11115 I 0.000
NechaG43113 Fusarium solani NechaG43113 I 0.000
FVEG_08948 Fusarium verticillioides FVEG_08948 I 0.000
GGTG_08988 Gaeumannomyces graminis GGTG_08988 I 0.000
HCBG_01536 Histoplasma capsulatum HCBG_01536 I 0.000
PAS_chr3_0554 Komagataella pastoris PAS_chr3_0554 I 0.000
KUCA_T00004312001 Kuraishia capsulata KUCA_T00004312001 I 0.000
LEMA_P078460.1 Leptosphaeria maculans LEMA_P078460.1 I 0.000
MGG_08757 Magnaporthe oryzae MGG_08757 I 0.000
MAPG_11476 Magnaporthe poae MAPG_11476 I 0.000
MBM_01810 Marssonina brunnea MBM_01810 I 0.000
MAC_01626 Metarhizium acridum MAC_01626 I 0.000
MAM_00201 Metarhizium album MAM_00201 I 0.000
MANI_015197 Metarhizium anisopliae MANI_015197 I 0.000
MBR_02792 Metarhizium brunneum MBR_02792 I 0.000
MGU_00220 Metarhizium guizhouense MGU_00220 I 0.000
MAJ_02407 Metarhizium majus MAJ_02407 I 0.000
X797_000845 Metarhizium robertsii X797_000845 I 0.000
PGUG_02473 Meyerozyma guilliermondii PGUG_02473 I 0.000
MCYG_03934 Microsporum canis MCYG_03934 I 0.000
MGYG_07717 Microsporum gypseum MGYG_07717 I 0.000
GNLVRS01_PISO0A05500g Millerozyma farinosa GNLVRS01_PISO0A05500g I 0.000
GNLVRS01_PISO0B05567g Millerozyma farinosa GNLVRS01_PISO0B05567g I 0.000
MYCTH_2303382 Myceliophthora thermophila MYCTH_2303382 I 0.000
estExt_Genewise1Plus.C_140693 Mycosphaerella fijiensis estExt_Genewise1Plus.C_140693 I 0.000
fgenesh1_pg.C_chr_2000670 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000670 I 0.000
e_gw1.20.504.1 Nectria haematococca e_gw1.20.504.1 I 0.000
NFIA_092600 Neosartorya fischeri CADNFIAG00008096 I 0.000
NCU09496 Neurospora crassa NCU09496 I 0.000
estExt_Genewise1.C_170195 Neurospora discreta estExt_Genewise1.C_170195 I 0.000
NEUTE1DRAFT_80722 Neurospora tetrasperma NEUTE1DRAFT_80722 I 0.000
HPODL_04926 Ogataea parapolymorpha HPODL_04926 I 0.000
OIDMADRAFT_40290 Oidiodendron maius OIDMADRAFT_40290 I 0.000
F503_02301 Ophiostoma piceae uamh F503_02301 I 0.000
PABG_05027 Paracoccidioides brasiliensis PABG_05027 I 0.000
PAAG_05527 Paracoccidioides sp lutzii PAAG_05527 I 0.000
Pc21g19860 Penicillium chrysogenum Pc21g19860 I 0.000
PDIP_38500 Penicillium digitatum PDIP_38500 I 0.000
PEX1_028120 Penicillium expansum PEX1_028120 I 0.000
PITC_000810 Penicillium italicum PITC_000810 I 0.000
PMAA_034200 Penicillium marneffei PMAA_034200 I 0.000
PDE_07881 Penicillium oxalicum PDE_07881 I 0.000
PCH_Pc21g19860 Penicillium rubens PCH_Pc21g19860 I 0.000
U727_00433330511 Penicillium solitum U727_00433330511 I 0.000
PFICI_05781 Pestalotiopsis fici PFICI_05781 I 0.000
SNOG_10626 Phaeosphaeria nodorum SNOG_10626 I 0.000
XP_002492783.1 Pichia pastoris XP_002492783.1 I 0.000
estExt_gwp_genewisePlus_worm.C_chr_1.20217 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_1.20217 I 0.000
PODANS_7_1460 Podospora anserina PODANS_7_1460 I 0.000
MYCFIDRAFT_59416 Pseudocercospora fijiensis MYCFIDRAFT_59416 I 0.000
PTT_12094 Pyrenophora teres PTT_12094 I 0.000
PTRG_09820 Pyrenophora triticirepentis PTRG_09820 I 0.000
Z518_02984 Rhinocladiella mackenziei Z518_02984 I 0.000
SAPIO_CDS2067 Scedosporium apiospermum SAPIO_CDS2067 I 0.000
PICST_80960 Scheffersomyces stipitis PICST_80960 I 0.000
SPOG_00558 Schizosaccharomyces cryophilus SPOG_00558 I 0.000
SOCG_02266 Schizosaccharomyces octosporus SOCG_02266 I 0.000
rst2 Schizosaccharomyces pombe SPAC6F12.02 D 0.000
SBOR_3025 Sclerotinia borealis SBOR_3025 N 0.000
SS1G_03567 Sclerotinia sclerotiorum SS1G_03567 I 0.000
SETTUDRAFT_37086 Setosphaeria turcica SETTUDRAFT_37086 I 0.000
SMAC_07883 Sordaria macrospora SMAC_07883 I 0.000
SPAPADRAFT_153689 Spathaspora passalidarum SPAPADRAFT_153689 I 0.000
SEPMUDRAFT_147395 Sphaerulina musiva SEPMUDRAFT_147395 I 0.000
SPBR_04561 Sporothrix brasiliensis SPBR_04561 I 0.000
HMPREF1624_05376 Sporothrix schenckii HMPREF1624_05376 I 0.000
S40288_04249 Stachybotrys chartarum S40288_04249 I 0.000
S40285_06430 Stachybotrys chlorohalonata S40285_06430 I 0.000
SNOG_10626 Stagonospora nodorum SNOG_10626 I 0.000
PMAA_034200 Talaromyces marneffei PMAA_034200 I 0.000
TSTA_063340 Talaromyces stipitatus TSTA_063340 I 0.000
THITE_2120332 Thielavia terrestris THITE_2120332 I 0.000
VHEMI08775 Torrubiella hemipterigena VHEMI08775 I 0.000
TRIATDRAFT_283087 Trichoderma atroviride TRIATDRAFT_283087 I 0.000
TRIREDRAFT_58897 Trichoderma reesei TRIREDRAFT_58897 I 0.000
TRIVIDRAFT_213523 Trichoderma virens TRIVIDRAFT_213523 I 0.000
TEQG_03348 Trichophyton equinum TEQG_03348 I 0.000
H101_06499 Trichophyton interdigitale H101_06499 I 0.000
H102_04056 Trichophyton rubrum H102_04056 I 0.000
H105_04085 Trichophyton soudanense H105_04085 I 0.000
TESG_04883 Trichophyton tonsurans TESG_04883 I 0.000
TRV_02713 Trichophyton verrucosum TRV_02713 I 0.000
GSTUM_00010178001 Tuber melanosporum GSTUM_00010178001 I 0.000
UREG_04917 Uncinocarpus reesii UREG_04917 I 0.000
UV8b_6591 Ustilaginoidea virens UV8b_6591 I 0.000
PV09_08170 Verruconis gallopava PV09_08170 I 0.000
VDAG_09618 Verticillium dahliae VDAG_09618 I 0.000
BN7_6590 Wickerhamomyces ciferrii BN7_6590 I 0.000
YALI0_D18678g Yarrowia lipolytica YALI0_D18678g I 0.000
Mycgr3G90980 Zymoseptoria tritici Mycgr3G90980 I 0.000