XP_002943959 (Xenopus tropicalis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 XP_002943959 T319091_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.654 1.000
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.654 1.000
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.654 1.000
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.654 1.000
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.654 1.000
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.654 1.000
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002943959 RFX 1 31

Links

Other RFX family TFs
Other Xenopus tropicalis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17299 Aegilops tauschii F775_17299 I 0.000
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.000
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.000
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.000
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.000
ERF022 Arabidopsis thaliana AT1G33760 I 0.000
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.000
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.000
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.000
Bo2g072910 Brassica oleracea Bo2g072910 I 0.000
Bo5g086680 Brassica oleracea Bo5g086680 I 0.000
Bo6g046850 Brassica oleracea Bo6g046850 I 0.000
Bo6g094210 Brassica oleracea Bo6g094210 I 0.000
Bo6g113020 Brassica oleracea Bo6g113020 I 0.000
Bo8g027240 Brassica oleracea Bo8g027240 I 0.000
Bra003924 Brassica rapa Bra003924 I 0.000
Bra007975 Brassica rapa Bra007975 I 0.000
Bra010210 Brassica rapa Bra010210 I 0.000
Bra016136 Brassica rapa Bra016136 I 0.000
Bra028009 Brassica rapa Bra028009 I 0.000
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.000
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.000
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.000
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.000
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.000
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.000
Ca_15064 Cicer arietinum Ca_15064 I 0.000
Cla012661 Citrullus lanatus Cla012661 I 0.000
Cla012665 Citrullus lanatus Cla012665 I 0.000
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.000
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.000
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.000
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.000
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.000
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.000
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.000
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.000
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.000
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.000
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.000
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.000
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.000
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.000
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.000
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.000
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.000
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.000
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.000
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.000
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.000
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.000
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.000
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.000
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.000
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.000
MDP0000122739 Malus domestica MDP0000122739 I 0.000
MDP0000122740 Malus domestica MDP0000122740 I 0.000
MDP0000151428 Malus domestica MDP0000151428 I 0.000
MDP0000283350 Malus domestica MDP0000283350 I 0.000
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.000
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.000
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.000
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.000
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.000
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.000
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.000
OB11G16300 Oryza brachyantha OB11G16300 I 0.000
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.000
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.000
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.000
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.000
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.000
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.000
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.000
OS11G0242300 Oryza sativa OS11G0242300 I 0.000
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.000
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.000
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.000
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.000
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.000
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.000
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.000
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.000
Pm004269 Prunus mume Pm004269 I 0.000
Pm004272 Prunus mume Pm004272 I 0.000
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.000
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.000
27805.m000021 Ricinus communis 27805.m000021 I 0.000
28118.m000034 Ricinus communis 28118.m000034 I 0.000
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.000
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.000
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.000
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.000
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.000
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.000
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.000
Si026882m.g Setaria italica Si026882m.g I 0.000
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.000
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.000
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.000
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.000
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.000
TCM_036269 Theobroma cacao TCM_036269 I 0.000
TCM_036270 Theobroma cacao TCM_036270 I 0.000
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.000
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.000
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.000
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.000
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.000
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.000
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.000
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.000
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.000
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.000