MTR_0140s0010 (Medicago truncatula)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 MTR_0140s0010 T320539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.850 0.850
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.850 0.850
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH16582 RWP-RK 148 167

Links

Other RWP-RK family TFs
Other Medicago truncatula TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07483 Aegilops tauschii F775_07483 I
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.800
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I
RKD1 Arabidopsis thaliana AT1G18790 I 0.800
RKD3 Arabidopsis thaliana AT5G66990 N
RKD2 Arabidopsis thaliana AT1G74480 D
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I
Bo9g020450 Brassica oleracea Bo9g020450 N
Bo7g064180 Brassica oleracea Bo7g064180 I 0.750
Bra037130 Brassica rapa Bra037130 N
Bra012122 Brassica rapa Bra012122 I 0.750
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I
Carubv10011133m.g Capsella rubella Carubv10011133m.g I
Carubv10021541m.g Capsella rubella Carubv10021541m.g I
Carubv10027579m.g Capsella rubella Carubv10027579m.g N
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I
Ca_13151 Cicer arietinum Ca_13151 I
Cla019404 Citrullus lanatus Cla019404 I
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I
Cucsa.197700 Cucumis sativus Cucsa.197700 I
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.850
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.800
gene12898-v1.0-hybrid Fragaria vesca gene12898-v1.0-hybrid N
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I
GLYMA17G10866 Glycine max GLYMA17G10866 I
GLYMA06G20881 Glycine max GLYMA06G20881 I
GLYMA05G01030 Glycine max GLYMA05G01030 I
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.750
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I
MLOC_12609 Hordeum vulgare MLOC_12609 I
MLOC_59560 Hordeum vulgare MLOC_59560 I
LPERR06G07570 Leersia perrieri LPERR06G07570 I
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.800
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.800
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I
MDP0000261199 Malus domestica MDP0000261199 I
MDP0000266172 Malus domestica MDP0000266172 I 0.800
cassava35166.m1 Manihot esculenta cassava35166.m1 I
mg020279m Mimulus guttatus mg020279m I
mgf022310m Mimulus guttatus mgf022310m I
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N
OB06G17750 Oryza brachyantha OB06G17750 I
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I
BGIOSGA022580 Oryza indica BGIOSGA022580 I
OMERI06G09770 Oryza meridionalis OMERI06G09770 I
ONIVA06G09450 Oryza nivara ONIVA06G09450 I
OPUNC06G07940 Oryza punctata OPUNC06G07940 I
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I
OS06G0228950 Oryza sativa OS06G0228950 I
Pavir.J13146 Panicum virgatum Pavir.J13146 I
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.800
Pm024905 Prunus mume Pm024905 I
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I
30138.m004071 Ricinus communis 30138.m004071 I
Si008273m.g Setaria italica Si008273m.g I
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I
Sb10g008120 Sorghum bicolor Sb10g008120 I
TCM_014009 Theobroma cacao TCM_014009 I
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I
TRIUR3_19503 Triticum urartu TRIUR3_19503 I
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I
GRMZM2G392306 Zea mays GRMZM2G392306 I