Bostr.3288s0094 (Boechera stricta)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Bostr.3288s0094 T321067_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.898 0.898
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.898 0.898
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3288s0094.1.p RWP-RK 134 182

Links

Other RWP-RK family TFs
Other Boechera stricta TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00140p00087970 Amborella trichopoda AMTR_s00140p00087970 N
NAC2 Arabidopsis lyrata scaffold_600382.1 I
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I
NAC053 Arabidopsis thaliana AT3G10500 D
NAC078 Arabidopsis thaliana AT5G04410 D
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I
Bo3g002800 Brassica oleracea Bo3g002800 I
Bo9g180050 Brassica oleracea Bo9g180050 I
Bo1g143830 Brassica oleracea Bo1g143830 I
Bra005804 Brassica rapa Bra005804 I
Bra009456 Brassica rapa Bra009456 I
Bra028790 Brassica rapa Bra028790 I
Bra034120 Brassica rapa Bra034120 I
PK11467.1 Cannabis sativa PK11467.1 I
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I
Cagra.0834s0027 Capsella grandiflora Cagra.0834s0027 I
Carubv10013370m.g Capsella rubella Carubv10013370m.g I
Cla020837 Citrullus lanatus Cla020837 I
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I
Cucsa.186150 Cucumis sativus Cucsa.186150 I
Cucsa.308770 Cucumis sativus Cucsa.308770 I
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I
GLYMA20G33390 Glycine max GLYMA20G33390 N
Lus10017458.g Linum usitatissimum Lus10017458.g I
Lus10028824.g Linum usitatissimum Lus10028824.g N
chr5.CM0909.760.nc Lotus japonicus chr5.CM0909.760.nc N
MDP0000457996 Malus domestica MDP0000457996 I
MDP0000695714 Malus domestica MDP0000695714 I
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I
POPTR_0010s23650 Populus trichocarpa POPTR_0010s23650 I
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I
Pm017550 Prunus mume Pm017550 I
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I
28872.m000248 Ricinus communis 28872.m000248 I
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I
TCM_043360 Theobroma cacao TCM_043360 I