Carubv10011133m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10011133m.g T321093_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.837 0.837
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011133m RWP-RK 129 177

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.00083_#_41 Aspergillus carbonarius fgenesh1_pm.00083_#_41 N
e_gw1.00866.217.1 Aspergillus carbonarius e_gw1.00866.217.1 N
AFUA_3G12180 Aspergillus fumigatus CADAFUAG00005119 N
ANIA_05052 Aspergillus nidulans CADANIAG00005337 N
CADANGAG00011548 Aspergillus niger CADANGAG00011548 N
COCC4DRAFT_167760 Bipolaris maydis COCC4DRAFT_167760 N
COCMIDRAFT_94654 Bipolaris oryzae COCMIDRAFT_94654 N
COCSADRAFT_122027 Bipolaris sorokiniana COCSADRAFT_122027 N
COCVIDRAFT_104890 Bipolaris victoriae COCVIDRAFT_104890 N
COCCADRAFT_90843 Bipolaris zeicola COCCADRAFT_90843 N
CIMG_01957 Coccidioides immitis CIMG_01957 N
CPC735_045680 Coccidioides posadasii CPC735_045680 N
estExt_Genewise1Plus.C_140579 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_140579 N
Pc23g00600 Penicillium chrysogenum Pc23g00600 N
Pc21g12360 Penicillium chrysogenum Pc21g12360 N
PDE_04927 Penicillium oxalicum PDE_04927 N
PDE_04626 Penicillium oxalicum PDE_04626 N
PCH_Pc23g00600 Penicillium rubens PCH_Pc23g00600 N
PCH_Pc21g12360 Penicillium rubens PCH_Pc21g12360 N
PTRG_02939 Pyrenophora triticirepentis PTRG_02939 N