Pavir.Da01160 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Da01160 T321220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.755 0.755
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.755 0.755
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da01160.1.p RWP-RK 813 861

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G32920 Brachypodium distachyon BRADI4G32920 I
LPERR08G15570 Leersia perrieri LPERR08G15570 I
LPERR09G10020 Leersia perrieri LPERR09G10020 I
OBART08G18720 Oryza barthii OBART08G18720 I
OBART09G13750 Oryza barthii OBART09G13750 I
OBART09G13760 Oryza barthii OBART09G13760 I
OB09G20300 Oryza brachyantha OB09G20300 I
ORGLA08G0162900 Oryza glaberrima ORGLA08G0162900 I
ORGLA09G0104900 Oryza glaberrima ORGLA09G0104900 I
OGLUM09G14340 Oryza glumaepatula OGLUM09G14340 I
OGLUM08G19690 Oryza glumaepatula OGLUM08G19690 I
BGIOSGA026766 Oryza indica BGIOSGA026766 I
BGIOSGA029595 Oryza indica BGIOSGA029595 I
OLONG_013604 Oryza longistaminata OLONG_013604 I
OMERI08G14760 Oryza meridionalis OMERI08G14760 I
ONIVA08G20730 Oryza nivara ONIVA08G20730 I
ONIVA09G14270 Oryza nivara ONIVA09G14270 I
OPUNC08G16670 Oryza punctata OPUNC08G16670 I
OPUNC09G12240 Oryza punctata OPUNC09G12240 I
OPUNC09G12140 Oryza punctata OPUNC09G12140 I
ORUFI08G08020 Oryza rufipogon ORUFI08G08020 I
ORUFI09G14730 Oryza rufipogon ORUFI09G14730 I
OS08G0487100 Oryza sativa OS08G0487100 I
OS09G0474000 Oryza sativa OS09G0474000 I
Pavir.Ba01782 Panicum virgatum Pavir.Ba01782 I
Pavir.Bb02514 Panicum virgatum Pavir.Bb02514 I
Pavir.Fa00602 Panicum virgatum Pavir.Fa00602 I
Si031238m.g Setaria italica Si031238m.g I
Sb02g027410 Sorghum bicolor Sb02g027410 I
Sb07g028900 Sorghum bicolor Sb07g028900 I
Sb07g028960 Sorghum bicolor Sb07g028960 I
Traes_5BL_C559EFC8A Triticum aestivum Traes_5BL_C559EFC8A I
Traes_5DL_591F8EFBD Triticum aestivum Traes_5DL_591F8EFBD I
AC186606.4_FG003 Zea mays AC186606.4_FG003 I
GRMZM2G144480 Zea mays GRMZM2G144480 I