fgenesh2_kg.3__997__AT3G09735.1 (Arabidopsis lyrata)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 fgenesh2_kg.3__997__AT3G09735.1 T321371_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.984 0.984
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__997__AT3G09735.1 S1FA 8 71

Links

Other S1FA family TFs
Other Arabidopsis lyrata TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N
SIG4 Arabidopsis lyrata scaffold_601382.1 N
SIGD Arabidopsis thaliana AT5G13730 N
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N
Bo9g166510 Brassica oleracea Bo9g166510 N
Bo2g011520 Brassica oleracea Bo2g011520 N
Bra023430 Brassica rapa Bra023430 N
Bra008807 Brassica rapa Bra008807 N
PK06863.1 Cannabis sativa PK06863.1 N
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N
Carubv10001054m.g Capsella rubella Carubv10001054m.g N
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N
SIG4 Populus trichocarpa POPTR_0009s06210 N
29864.m001444 Ricinus communis 29864.m001444 N
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N
SIG4 Vitis vinifera VIT_13s0064g00190 N