CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0016s08890
(
Populus trichocarpa
)
S1FA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04689 (S1FA)
IPR006779
POPTR_0016s08890
T321425_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.818
0.818
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0016s08890.1
S1FA
24
89
DAEPKGLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE
Links
Other
S1FA
family TFs
Other
Populus trichocarpa
TFs
106 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000006904
Ailuropoda melanoleuca
ENSAMEG00000006904
N
ZNF408
Bos taurus
ENSBTAG00000027557
N
ZNF408
Callithrix jacchus
ENSCJAG00000019859
N
ZNF408
Canis familiaris
ENSCAFG00000009143
N
ENSCSAG00000005681
Chlorocebus sabaeus
ENSCSAG00000005681
N
ZNF408
Choloepus hoffmanni
ENSCHOG00000009909
N
ZNF408
Dasypus novemcinctus
ENSDNOG00000047669
N
Zfp408
Dipodomys ordii
ENSDORG00000000387
N
ZNF408
Equus caballus
ENSECAG00000010878
N
ZNF408
Erinaceus europaeus
ENSEEUG00000010466
N
ZNF408
Felis catus
ENSFCAG00000029105
N
ZNF408
Gorilla gorilla
ENSGGOG00000010152
N
ZNF408
Homo sapiens
ENSG00000175213
N
ENSSTOG00000005114
Ictidomys tridecemlineatus
ENSSTOG00000005114
N
ZNF408
Loxodonta africana
ENSLAFG00000027848
N
ENSP00000309606
Macaca fascicularis
ENSP00000309606
N
ZNF408
Macaca mulatta
ENSMMUG00000019673
N
ENSMPUG00000005490
Mustela putorius furo
ENSMPUG00000005490
N
Myotis_brandtii_ZNF408_10025512
Myotis brandtii
Myotis_brandtii_ZNF408_10025512
N
ZNF408
Myotis lucifugus
ENSMLUG00000017629
N
ENSNLEG00000014132
Nomascus leucogenys
ENSNLEG00000014132
N
ZNF408
Ochotona princeps
ENSOPRG00000009225
N
ZNF408
Oryctolagus cuniculus
ENSOCUG00000010953
N
ZNF408
Otolemur garnettii
ENSOGAG00000034080
N
ZNF408
Pan troglodytes
ENSPTRG00000003551
N
ENSPANG00000025797
Papio anubis
ENSPANG00000025797
N
ENSPPYG00000003318
Pongo abelii
ENSPPYG00000003318
N
ZNF408
Procavia capensis
ENSPCAG00000014001
N
ZNF408
Pteropus vampyrus
ENSPVAG00000015791
N
ZNF408
Sus scrofa
ENSSSCG00000023097
N