Cagra.2515s0064 (Capsella grandiflora)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cagra.2515s0064 T321487_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.955 0.955
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2515s0064.1.p S1FA 8 73

Links

Other S1FA family TFs
Other Capsella grandiflora TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PYE Arabidopsis lyrata fgenesh2_kg.5__1121__AT3G47640.1 N
BHLH47 Arabidopsis thaliana AT3G47640 N
Bostr.18473s0193 Boechera stricta Bostr.18473s0193 N
Cagra.1659s0007 Capsella grandiflora Cagra.1659s0007 N
Carubv10017931m.g Capsella rubella Carubv10017931m.g N
evm.TU.contig_30141.2 Carica papaya evm.TU.contig_30141.2 N
Thhalv10010670m.g Eutrema salsugineum Thhalv10010670m.g N
Gorai.007G036700 Gossypium raimondii Gorai.007G036700 N
Pm024772 Prunus mume Pm024772 N
PRUPE_ppa010295mg Prunus persica PRUPE_ppa010295mg N
PGSC0003DMG400000599 Solanum tuberosum PGSC0003DMG400000599 N