Bo7g049940 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo7g049940 T322448_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.982 0.893
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.880
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g049940.1 SBP 153 227

Links

Other SBP family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N
MBD10 Arabidopsis thaliana AT1G15340 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Bo8g066360 Brassica oleracea Bo8g066360 N
Bra016665 Brassica rapa Bra016665 N
PK04144.1 Cannabis sativa PK04144.1 N
PK24888.1 Cannabis sativa PK24888.1 N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N
Ca_06682 Cicer arietinum Ca_06682 N
Ca_19192 Cicer arietinum Ca_19192 N
Cla012920 Citrullus lanatus Cla012920 N
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N
GLYMA15G01040 Glycine max GLYMA15G01040 N
GLYMA04G23780 Glycine max GLYMA04G23780 N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA06G30350 Glycine max GLYMA06G30350 N
GLYMA06G30590 Glycine max GLYMA06G30590 N
GLYMA13G44230 Glycine max GLYMA13G44230 N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N
Lus10002168.g Linum usitatissimum Lus10002168.g N
Lus10019406.g Linum usitatissimum Lus10019406.g N
Lus10030108.g Linum usitatissimum Lus10030108.g N
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N
MDP0000574053 Malus domestica MDP0000574053 N
MDP0000375866 Malus domestica MDP0000375866 N
MDP0000301302 Malus domestica MDP0000301302 N
MDP0000248422 Malus domestica MDP0000248422 N
MDP0000152128 Malus domestica MDP0000152128 N
cassava5958.m1 Manihot esculenta cassava5958.m1 N
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
MTR_4g114770 Medicago truncatula MTR_4g114770 N
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N
Pm027560 Prunus mume Pm027560 N
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
29841.m002855 Ricinus communis 29841.m002855 N
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
TCM_027169 Theobroma cacao TCM_027169 N
TCM_038107 Theobroma cacao TCM_038107 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N