OBART06G23500 (Oryza barthii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 OBART06G23500 T322778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.886 0.746
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G23500.1 SBP 165 235

Links

Other SBP family TFs
Other Oryza barthii TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20508 Aegilops tauschii F775_20508 N 0.897
F775_00761 Aegilops tauschii F775_00761 I 0.955
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.898
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.914
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.886
SPL8 Arabidopsis thaliana AT1G02065 D 0.886
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.886
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.972
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.903
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.977
Bo8g118210 Brassica oleracea Bo8g118210 I 0.886
Bo5g001290 Brassica oleracea Bo5g001290 I 0.886
Bra033221 Brassica rapa Bra033221 I 0.886
Bra032662 Brassica rapa Bra032662 I 0.886
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.886
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.886
Cla020006 Citrullus lanatus Cla020006 I 0.915
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.897
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.886
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.914
MLOC_326 Hordeum vulgare MLOC_326 I 0.978
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.954
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.903
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.975
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.971
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.903
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.978
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.891
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.927
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.925
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.931
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.948
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.890
OBART04G27990 Oryza barthii OBART04G27990 I 0.903
OB02G15090 Oryza brachyantha OB02G15090 I 0.971
OB04G34990 Oryza brachyantha OB04G34990 I 0.903
OB06G31100 Oryza brachyantha OB06G31100 I 0.978
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.978
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.903
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.956
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.903
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.978
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.903
SPL10 Oryza indica BGIOSGA023408 I 0.978
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.956
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.903
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.956
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.903
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.978
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.978
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.903
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.970
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.903
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.978
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.903
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.978
SPL5 Oryza sativa OS02G0177300 I 0.956
SPL8 Oryza sativa OS04G0656500 I 0.903
SPL10 Oryza sativa OS06G0659100 I 0.978
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.965
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.978
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.903
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.903
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.978
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.902
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.900
29983.m003158 Ricinus communis 29983.m003158 I 0.896
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.915
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.911
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.911
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.915
Si022315m.g Setaria italica Si022315m.g I 0.903
Si017338m.g Setaria italica Si017338m.g I 0.966
Si006559m.g Setaria italica Si006559m.g I 0.978
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.889
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.977
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.978
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.903
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.978
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.897
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.971
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.946
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.903
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.961
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.977
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.903
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.900
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.978
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.966