TCM_005620 (Theobroma cacao)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 TCM_005620 T323076_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.943 0.773
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.934 0.747
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.931 0.720
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.931 0.720
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.931 0.720
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.904 0.707
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.904 0.707
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.902 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.902 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.902 0.720
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.901 0.693
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.895 0.720
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.891 0.707
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.891 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX96362 SBP 191 265

Links

Other SBP family TFs
Other Theobroma cacao TFs

432 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28196 Aegilops tauschii F775_28196 N
F775_29161 Aegilops tauschii F775_29161 N
BRADI3G52170 Brachypodium distachyon BRADI3G52170 N
Bo8g028900 Brassica oleracea Bo8g028900 N
Bo5g049240 Brassica oleracea Bo5g049240 N
Bra023280 Brassica rapa Bra023280 N
Bra035494 Brassica rapa Bra035494 N
Ca_12361 Cicer arietinum Ca_12361 N
Cucsa.321900 Cucumis sativus Cucsa.321900 N
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N
GLYMA09G33770 Glycine max GLYMA09G33770 N
GLYMA11G11640 Glycine max GLYMA11G11640 N
GLYMA12G01890 Glycine max GLYMA12G01890 N
MLOC_63157 Hordeum vulgare MLOC_63157 N
LPERR04G19240 Leersia perrieri LPERR04G19240 N
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N
GSMUA_Achr4G27280_001 Musa acuminata GSMUA_Achr4G27280_001 N
estExt_gwp_gw1.C_1330066 Physcomitrella patens estExt_gwp_gw1.C_1330066 N
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N
SapurV1A.1507s0030 Salix purpurea SapurV1A.1507s0030 N
SapurV1A.0555s0010 Salix purpurea SapurV1A.0555s0010 N
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N
SELMODRAFT_39612 Selaginella moellendorffii SELMODRAFT_39612 N
SELMODRAFT_116939 Selaginella moellendorffii SELMODRAFT_116939 N
Si017318m.g Setaria italica Si017318m.g N
Traes_6DL_CF3557CFC Triticum aestivum Traes_6DL_CF3557CFC N
Traes_2BL_69847FCA6 Triticum aestivum Traes_2BL_69847FCA6 N
Traes_2AL_74EFA5757 Triticum aestivum Traes_2AL_74EFA5757 N
Traes_1BL_C202F3DE1 Triticum aestivum Traes_1BL_C202F3DE1 N
TRIUR3_25489 Triticum urartu TRIUR3_25489 N
GRMZM2G408887 Zea mays GRMZM2G408887 N
GRMZM2G131280 Zea mays GRMZM2G131280 N
GRMZM2G004548 Zea mays GRMZM2G004548 N