Cucsa.126820 (Cucumis sativus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cucsa.126820 T323259_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.945 0.720
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.945 0.720
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.945 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.921 0.787
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.921 0.720
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.907 0.733
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.899 0.733
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.896 0.747
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.896 0.747
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.896 0.747
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.895 0.653
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.892 0.693
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.890 0.747
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.890 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.126820.1 SBP 78 152

Links

Other SBP family TFs
Other Cucumis sativus TFs

360 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10096 Aegilops tauschii F775_10096 I 0.000
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.000
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.000
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.000
BHLH30 Arabidopsis thaliana AT1G68810 I 0.000
BHLH32 Arabidopsis thaliana AT3G25710 I 0.000
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.000
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.000
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
Bo7g081980 Brassica oleracea Bo7g081980 I 0.000
Bo6g108270 Brassica oleracea Bo6g108270 I 0.000
Bo2g138630 Brassica oleracea Bo2g138630 I 0.000
Bra004338 Brassica rapa Bra004338 I 0.000
Bra025158 Brassica rapa Bra025158 I 0.000
Bra026510 Brassica rapa Bra026510 I 0.000
Bra004015 Brassica rapa Bra004015 I 0.000
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.000
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.000
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.000
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.000
evm.TU.supercontig_65.63 Carica papaya evm.TU.supercontig_65.63 N 0.000
evm.TU.supercontig_1892.1 Carica papaya evm.TU.supercontig_1892.1 I 0.000
Ca_18110 Cicer arietinum Ca_18110 N 0.000
Ca_24775 Cicer arietinum Ca_24775 I 0.000
Cla000223 Citrullus lanatus Cla000223 I 0.000
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.000
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.000
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.000
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.000
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.000
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.000
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.000
cassava39612.m1 Manihot esculenta cassava39612.m1 I 0.000
cassava40529.m1 Manihot esculenta cassava40529.m1 I 0.000
cassava41468.m1 Manihot esculenta cassava41468.m1 I 0.000
cassava45188.m1 Manihot esculenta cassava45188.m1 I 0.000
cassava45233.m1 Manihot esculenta cassava45233.m1 I 0.000
cassava45234.m1 Manihot esculenta cassava45234.m1 I 0.000
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.000
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OBART08G15650 Oryza barthii OBART08G15650 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.000
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.000
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.000
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.000
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.000
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.000
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.000
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.000
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
OS08G0432800 Oryza sativa OS08G0432800 I 0.000
OS09G0410700 Oryza sativa OS09G0410700 I 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
POPTR_0003s14710 Populus trichocarpa POPTR_0003s14710 I 0.000
POPTR_0001s11400 Populus trichocarpa POPTR_0001s11400 I 0.000
30068.m002581 Ricinus communis 30068.m002581 I 0.000
SapurV1A.0059s0390 Salix purpurea SapurV1A.0059s0390 I 0.000
SapurV1A.0094s0280 Salix purpurea SapurV1A.0094s0280 I 0.000
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.000
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.000
Solyc02g091820.1 Solanum lycopersicum Solyc02g091820.1 N 0.000
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.000
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.000
PGSC0003DMG400030623 Solanum tuberosum PGSC0003DMG400030623 N 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.000
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.000
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.000
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.000
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000