29864.m001444 (Ricinus communis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 29864.m001444 T324071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29864.m001444 Sigma 70 181 250

Links

Other Sigma 70 family TFs
Other Ricinus communis TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.732
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.729
SIGD Arabidopsis thaliana AT5G13730 N 0.746
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.746
Bo9g166510 Brassica oleracea Bo9g166510 N 0.746
Bo2g011520 Brassica oleracea Bo2g011520 N 0.746
Bra008807 Brassica rapa Bra008807 N 0.746
Bra023430 Brassica rapa Bra023430 N 0.746
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.746
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.746
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.732
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.704
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.704
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.746
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.718
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.817
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.775
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.761
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.761
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.771