MDP0000939377 (Malus domestica)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 MDP0000939377 T324220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000939377 Sigma 70 275 345

Links

Other Sigma 70 family TFs
Other Malus domestica TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32229 Aegilops tauschii F775_32229 N 0.817
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.944
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.944
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.901
SIGA Arabidopsis thaliana AT1G64860 N 0.901
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.915
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.817
Bo2g097550 Brassica oleracea Bo2g097550 N 0.915
Bra008513 Brassica rapa Bra008513 N 0.915
PK03826.1 Cannabis sativa PK03826.1 N 0.944
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.901
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.901
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.944
Ca_22625 Cicer arietinum Ca_22625 N 0.944
Ca_22622 Cicer arietinum Ca_22622 N 0.930
Cla006897 Citrullus lanatus Cla006897 N 0.958
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.944
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.930
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.958
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.944
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.915
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.944
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.944
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.944
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.930
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.944
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.859
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.829
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.958
MDP0000934360 Malus domestica MDP0000934360 N 1.000
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.944
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.930
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.930
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.915
mgf016433m Mimulus guttatus mgf016433m N 0.915
mgf004750m Mimulus guttatus mgf004750m N 0.915
mgf015154m Mimulus guttatus mgf015154m N 0.846
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.887
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.901
OBART08G03910 Oryza barthii OBART08G03910 N 0.859
OB08G14150 Oryza brachyantha OB08G14150 N 0.859
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.859
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.859
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.859
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.859
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.859
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.859
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.859
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.859
OS08G0163400 Oryza sativa OS08G0163400 N 0.859
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.845
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.859
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.958
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.930
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.958
Pm019567 Prunus mume Pm019567 N 0.972
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.972
30148.m001468 Ricinus communis 30148.m001468 N 0.944
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.944
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.944
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.944
Si013608m.g Setaria italica Si013608m.g N 0.859
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.901
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.901
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.901
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.901
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.831
TCM_025640 Theobroma cacao TCM_025640 N 0.944
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.817
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.800
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.817
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.817
SIGA Vitis vinifera VIT_16s0039g00660 N 0.958
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.817
GRMZM2G360541 Zea mays GRMZM2G360541 N 0.703
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.817