Pavir.Ib04452 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Ib04452 T324232_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04452.1.p Sigma 70 322 392
Pavir.Ib04452.2.p Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07378 Aegilops tauschii F775_07378 N 0.944
BRADI1G00750 Brachypodium distachyon BRADI1G00750 N 0.944
MLOC_4725 Hordeum vulgare MLOC_4725 N 0.944
LPERR08G06520 Leersia perrieri LPERR08G06520 N 0.972
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.746
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.730
OBART08G07320 Oryza barthii OBART08G07320 N 0.986
OB08G17050 Oryza brachyantha OB08G17050 N 1.000
ORGLA08G0064000 Oryza glaberrima ORGLA08G0064000 N 0.986
OGLUM08G08160 Oryza glumaepatula OGLUM08G08160 N 0.986
BGIOSGA028267 Oryza indica BGIOSGA028267 N 0.986
OLONG_007958 Oryza longistaminata OLONG_007958 N 0.986
OMERI03G18460 Oryza meridionalis OMERI03G18460 N 0.986
ONIVA08G08070 Oryza nivara ONIVA08G08070 N 0.986
OPUNC08G07030 Oryza punctata OPUNC08G07030 N 1.000
ORUFI08G08440 Oryza rufipogon ORUFI08G08440 N 0.986
OS08G0242800 Oryza sativa OS08G0242800 N 0.986
Pavir.Ha01929 Panicum virgatum Pavir.Ha01929 N 0.986
Pavir.Ia00050 Panicum virgatum Pavir.Ia00050 N 0.972
Si034994m.g Setaria italica Si034994m.g N 1.000
Sb01g000390 Sorghum bicolor Sb01g000390 N 0.986
Traes_4AL_A0565AC4C Triticum aestivum Traes_4AL_A0565AC4C N 0.944
Traes_5BL_B1F704307 Triticum aestivum Traes_5BL_B1F704307 N 0.944
Traes_5DL_8DC4CC983 Triticum aestivum Traes_5DL_8DC4CC983 N 0.944
TRIUR3_06257 Triticum urartu TRIUR3_06257 N 0.944
GRMZM2G144196 Zea mays GRMZM2G144196 N 0.986