Afo_R010787 (Aptenodytes forsteri)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Afo_R010787 T325258_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.989 0.989
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.989 0.989
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.989 0.989
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.989 0.989
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.989 0.989
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.989 0.989
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.923 0.923
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.923 0.923
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.923 0.923
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.923 0.923
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.923 0.923
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.923 0.923
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.912 0.912
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.912 0.912
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.912 0.912
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.912 0.912
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.912 0.912
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.912 0.912
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.813 0.813
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.802 0.802
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.802 0.802
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.802 0.802
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.802 0.802
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.802 0.802
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.802 0.802
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.802 0.802
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.802 0.802
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R010787 SMAD 60 164

Links

Other SMAD family TFs
Other Aptenodytes forsteri TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.000
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.000
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.000
SPL13A Arabidopsis thaliana AT5G50570 I 0.000
SPL13A Arabidopsis thaliana AT5G50670 D 0.000
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.000
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.000
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.000
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.000
Bo3g024180 Brassica oleracea Bo3g024180 I 0.000
Bo9g097630 Brassica oleracea Bo9g097630 I 0.000
Bra022766 Brassica rapa Bra022766 I 0.000
PK02140.1 Cannabis sativa PK02140.1 I 0.000
PK19500.1 Cannabis sativa PK19500.1 I 0.000
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.000
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.000
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.000
Ca_01426 Cicer arietinum Ca_01426 I 0.000
Ca_05711 Cicer arietinum Ca_05711 I 0.000
Cla002666 Citrullus lanatus Cla002666 I 0.000
Cla004156 Citrullus lanatus Cla004156 I 0.000
Cla019579 Citrullus lanatus Cla019579 I 0.000
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.000
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.000
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.000
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.000
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.000
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.000
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.000
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.000
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.000
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.000
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.000
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.000
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.000
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.000
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.000
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.000
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.000
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.000
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.000
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.000
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.000
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.000
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.000
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.000
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.000
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.000
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.000
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.000
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.000
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.000
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.000
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.000
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.000
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.000
mgf003797m Mimulus guttatus mgf003797m I 0.000
mgf010913m Mimulus guttatus mgf010913m I 0.000
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.000
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.000
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.000
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.000
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.000
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.000
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.000
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.000
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.000
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.000
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.000
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.000
OBART01G42150 Oryza barthii OBART01G42150 I 0.000
OBART09G15750 Oryza barthii OBART09G15750 I 0.000
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.000
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.000
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.000
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.000
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.000
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.000
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.000
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.000
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.000
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.000
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.000
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.000
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.000
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.000
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.000
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N 0.000
OS01G0922600 Oryza sativa OS01G0922600 I 0.000
SPL16 Oryza sativa OS08G0531600 I 0.000
SPL18 Oryza sativa OS09G0507100 I 0.000
SPL19 Oryza sativa OS11G0496600 I 0.000
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.000
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.000
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.000
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.000
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.000
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.000
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.000
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.000
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.000
Pm024528 Prunus mume Pm024528 I 0.000
Pm025028 Prunus mume Pm025028 I 0.000
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.000
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.000
29929.m004627 Ricinus communis 29929.m004627 I 0.000
30147.m014478 Ricinus communis 30147.m014478 I 0.000
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.000
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.000
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.000
Si001804m.g Setaria italica Si001804m.g I 0.000
Si013747m.g Setaria italica Si013747m.g N 0.000
Si026656m.g Setaria italica Si026656m.g I 0.000
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.000
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.000
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.000
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.000
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.000
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.000
TCM_008671 Theobroma cacao TCM_008671 I 0.000
TCM_011483 Theobroma cacao TCM_011483 I 0.000
TCM_014668 Theobroma cacao TCM_014668 I 0.000
Traes_5BL_96FDFC152 Triticum aestivum Traes_5BL_96FDFC152 N 0.000
Traes_5DL_1272B4BAC Triticum aestivum Traes_5DL_1272B4BAC N 0.000
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.000
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.000
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.000
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.000
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.000
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.000