nDi.2.2.2.g05388 (Dirofilaria immitis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 nDi.2.2.2.g05388 T325830_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.813 0.813
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.802 0.802
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.802 0.802
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.802 0.802
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.802 0.802
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.802 0.802
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.802 0.802
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.802 0.802
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.802 0.802
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.802 0.802
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.769 0.769
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.769 0.769
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.769 0.769
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.769 0.769
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.769 0.769
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.769 0.769
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.736 0.736
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.736 0.736
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.736 0.736
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.736 0.736
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.736 0.736
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.736 0.736
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.736 0.736
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.736 0.736
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.736 0.736
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.736 0.736
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.736 0.736
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nDi.2.2.2.t05388 SMAD 79 183

Links

Other SMAD family TFs
Other Dirofilaria immitis TFs

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28212 Aegilops tauschii F775_28212 I 0.000
AMTR_s00025p00249140 Amborella trichopoda AMTR_s00025p00249140 I 0.000
Aquca_006_00004 Aquilegia coerulea Aquca_006_00004 I 0.000
SHN1 Arabidopsis lyrata fgenesh2_kg.1__1687__AT1G15360.1 I 0.000
WIN1 Arabidopsis thaliana AT1G15360 D 0.000
Bostr.7128s0149 Boechera stricta Bostr.7128s0149 I 0.000
BRADI1G36590 Brachypodium distachyon BRADI1G36590 I 0.000
BRADI3G07450 Brachypodium distachyon BRADI3G07450 I 0.000
Bo8g066410 Brassica oleracea Bo8g066410 I 0.000
Bo8g106100 Brassica oleracea Bo8g106100 I 0.000
Bo9g011380 Brassica oleracea Bo9g011380 I 0.000
Bra016663 Brassica rapa Bra016663 I 0.000
Bra026140 Brassica rapa Bra026140 I 0.000
Bra036543 Brassica rapa Bra036543 I 0.000
Cagra.2238s0086 Capsella grandiflora Cagra.2238s0086 I 0.000
Carubv10010317m.g Capsella rubella Carubv10010317m.g I 0.000
evm.TU.supercontig_10.254 Carica papaya evm.TU.supercontig_10.254 I 0.000
Ca_02880 Cicer arietinum Ca_02880 I 0.000
Ca_06673 Cicer arietinum Ca_06673 I 0.000
Ca_13435 Cicer arietinum Ca_13435 I 0.000
Cla012435 Citrullus lanatus Cla012435 I 0.000
Cla012914 Citrullus lanatus Cla012914 I 0.000
Cla016967 Citrullus lanatus Cla016967 I 0.000
Cla021283 Citrullus lanatus Cla021283 I 0.000
Ciclev10009447m.g Citrus clementina Ciclev10009447m.g I 0.000
Ciclev10027305m.g Citrus clementina Ciclev10027305m.g I 0.000
orange1.1g027896m.g Citrus sinensis orange1.1g027896m.g I 0.000
Cucsa.132120 Cucumis sativus Cucsa.132120 I 0.000
Cucsa.292670 Cucumis sativus Cucsa.292670 I 0.000
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.000
Eucgr.C01178 Eucalyptus grandis Eucgr.C01178 I 0.000
Eucgr.C04221 Eucalyptus grandis Eucgr.C04221 I 0.000
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.000
Thhalv10008845m.g Eutrema salsugineum Thhalv10008845m.g I 0.000
gene31040-v1.0-hybrid Fragaria vesca gene31040-v1.0-hybrid I 0.000
GLYMA04G19650 Glycine max GLYMA04G19650 I 0.000
GLYMA06G29110 Glycine max GLYMA06G29110 I 0.000
GLYMA08G22590 Glycine max GLYMA08G22590 I 0.000
GLYMA13G23570 Glycine max GLYMA13G23570 I 0.000
GLYMA15G01140 Glycine max GLYMA15G01140 I 0.000
GLYMA17G12330 Glycine max GLYMA17G12330 I 0.000
Gorai.001G042300 Gossypium raimondii Gorai.001G042300 I 0.000
Gorai.009G017500 Gossypium raimondii Gorai.009G017500 I 0.000
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.000
MLOC_12747 Hordeum vulgare MLOC_12747 I 0.000
MLOC_59305 Hordeum vulgare MLOC_59305 I 0.000
LPERR02G06710 Leersia perrieri LPERR02G06710 I 0.000
LPERR06G17010 Leersia perrieri LPERR06G17010 I 0.000
Lus10005716.g Linum usitatissimum Lus10005716.g I 0.000
Lus10009480.g Linum usitatissimum Lus10009480.g I 0.000
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.000
Lus10030097.g Linum usitatissimum Lus10030097.g I 0.000
chr4.LjT07P17.60.nc Lotus japonicus chr4.LjT07P17.60.nc I 0.000
LjSGA_040388.1 Lotus japonicus LjSGA_040388.1 I 0.000
LjT09F21.30.nc Lotus japonicus LjT09F21.30.nc I 0.000
MDP0000124316 Malus domestica MDP0000124316 I 0.000
MDP0000172065 Malus domestica MDP0000172065 I 0.000
MDP0000290880 Malus domestica MDP0000290880 I 0.000
MDP0000430870 Malus domestica MDP0000430870 I 0.000
MDP0000873258 Malus domestica MDP0000873258 I 0.000
cassava11389.m1 Manihot esculenta cassava11389.m1 I 0.000
cassava24223.valid.m1 Manihot esculenta cassava24223.valid.m1 I 0.000
cassava34153.m1 Manihot esculenta cassava34153.m1 I 0.000
MTR_2g103700 Medicago truncatula MTR_2g103700 I 0.000
MTR_4g010640 Medicago truncatula MTR_4g010640 I 0.000
MTR_4g114570 Medicago truncatula MTR_4g114570 I 0.000
mgf005189m Mimulus guttatus mgf005189m I 0.000
GSMUA_Achr10G27000_001 Musa acuminata GSMUA_Achr10G27000_001 I 0.000
GSMUA_Achr5G22840_001 Musa acuminata GSMUA_Achr5G22840_001 I 0.000
GSMUA_Achr6G05210_001 Musa acuminata GSMUA_Achr6G05210_001 I 0.000
GSMUA_Achr7G10160_001 Musa acuminata GSMUA_Achr7G10160_001 I 0.000
GSMUA_Achr9G28540_001 Musa acuminata GSMUA_Achr9G28540_001 I 0.000
OBART02G07740 Oryza barthii OBART02G07740 I 0.000
OBART06G20370 Oryza barthii OBART06G20370 I 0.000
OB02G17060 Oryza brachyantha OB02G17060 I 0.000
OB06G28040 Oryza brachyantha OB06G28040 I 0.000
ORGLA02G0073000 Oryza glaberrima ORGLA02G0073000 I 0.000
ORGLA06G0167900 Oryza glaberrima ORGLA06G0167900 I 0.000
OGLUM02G07820 Oryza glumaepatula OGLUM02G07820 I 0.000
OGLUM06G21440 Oryza glumaepatula OGLUM06G21440 I 0.000
BGIOSGA007748 Oryza indica BGIOSGA007748 I 0.000
BGIOSGA020923 Oryza indica BGIOSGA020923 I 0.000
OLONG_004398 Oryza longistaminata OLONG_004398 I 0.000
OLONG_016936 Oryza longistaminata OLONG_016936 I 0.000
OMERI06G20980 Oryza meridionalis OMERI06G20980 I 0.000
ONIVA02G09300 Oryza nivara ONIVA02G09300 I 0.000
ONIVA06G24150 Oryza nivara ONIVA06G24150 I 0.000
OPUNC02G06960 Oryza punctata OPUNC02G06960 I 0.000
OPUNC04G25430 Oryza punctata OPUNC04G25430 I 0.000
OPUNC06G18570 Oryza punctata OPUNC06G18570 I 0.000
ORUFI03G26280 Oryza rufipogon ORUFI03G26280 I 0.000
ORUFI06G21790 Oryza rufipogon ORUFI06G21790 I 0.000
OS02G0202000 Oryza sativa OS02G0202000 I 0.000
OS06G0604000 Oryza sativa OS06G0604000 I 0.000
Pavir.Aa02977 Panicum virgatum Pavir.Aa02977 I 0.000
Pavir.Ab00737 Panicum virgatum Pavir.Ab00737 I 0.000
Pavir.Da00422 Panicum virgatum Pavir.Da00422 I 0.000
Pavir.Db01224 Panicum virgatum Pavir.Db01224 I 0.000
SHN1 Populus trichocarpa POPTR_0003s02750 I 0.000
POPTR_0006s06870 Populus trichocarpa POPTR_0006s06870 I 0.000
POPTR_0018s13130 Populus trichocarpa POPTR_0018s13130 I 0.000
Pm027542 Prunus mume Pm027542 I 0.000
PRUPE_ppa010601mg Prunus persica PRUPE_ppa010601mg I 0.000
PRUPE_ppa024826mg Prunus persica PRUPE_ppa024826mg I 0.000
28320.m001139 Ricinus communis 28320.m001139 I 0.000
29841.m002846 Ricinus communis 29841.m002846 I 0.000
SapurV1A.0034s0630 Salix purpurea SapurV1A.0034s0630 I 0.000
SapurV1A.0198s0340 Salix purpurea SapurV1A.0198s0340 N 0.000
SapurV1A.0198s0350 Salix purpurea SapurV1A.0198s0350 N 0.000
SapurV1A.0199s0350 Salix purpurea SapurV1A.0199s0350 I 0.000
SapurV1A.1759s0040 Salix purpurea SapurV1A.1759s0040 I 0.000
Si008394m.g Setaria italica Si008394m.g I 0.000
Solyc03g116610.2 Solanum lycopersicum Solyc03g116610.2 I 0.000
Solyc12g009490.1 Solanum lycopersicum Solyc12g009490.1 I 0.000
PGSC0003DMG400000636 Solanum tuberosum PGSC0003DMG400000636 I 0.000
PGSC0003DMG400002889 Solanum tuberosum PGSC0003DMG400002889 I 0.000
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.000
Sb04g006970 Sorghum bicolor Sb04g006970 I 0.000
Sb10g023600 Sorghum bicolor Sb10g023600 I 0.000
TCM_027157 Theobroma cacao TCM_027157 I 0.000
TCM_038081 Theobroma cacao TCM_038081 I 0.000
Traes_6AS_8E7166D79 Triticum aestivum Traes_6AS_8E7166D79 I 0.000
Traes_6DS_E6A0BE6CD Triticum aestivum Traes_6DS_E6A0BE6CD I 0.000
Traes_7DL_E1D7A51C8 Triticum aestivum Traes_7DL_E1D7A51C8 I 0.000
TRIUR3_22374 Triticum urartu TRIUR3_22374 I 0.000
SHN1 Vitis vinifera VIT_09s0002g06750 I 0.000
VIT_11s0016g05340 Vitis vinifera VIT_11s0016g05340 I 0.000
GRMZM2G085678 Zea mays GRMZM2G085678 I 0.000
GRMZM2G106591 Zea mays GRMZM2G106591 I 0.000