CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ML047927a *(Mnemiopsis leidyi)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	ML047927a	T331296_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.727	0.870
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.727	0.870
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.725	0.870
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.725	0.870
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.725	0.870
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.725	0.870
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.725	0.870
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.725	0.870
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.725	0.870
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.725	0.870
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.725	0.870
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.725	0.870
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.725	0.870
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.725	0.870
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.725	0.870
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.725	0.870
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.725	0.870
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.725	0.870
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.725	0.855
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.725	0.855
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.725	0.855
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.725	0.855
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.725	0.855
Sox21 M00208_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox21_3417	0.704	0.870
Sox3 M00827_2.00	Mus musculus	WDTVHNNN	NNNDBAHW	PBM Weirauch et al.(2013) pTH3087	0.704	0.855
Sox3 M03538_2.00	Mus musculus	RAACAATRNYATTGTTK	MAACAATRNYATTGTTY	SELEX Jolma et al.(2013) Sox3_1	0.704	0.855
Sox3 M03539_2.00	Mus musculus	BATCAATGBYATTGATD	HATCAATRVCATTGATV	SELEX Jolma et al.(2013) Sox3_2	0.704	0.855
Sox3 M03540_2.00	Mus musculus	DATGAATKNYATTCATR	YATGAATRNMATTCATH	SELEX Jolma et al.(2013) Sox3_3	0.704	0.855
SOX3 M05769_2.00	Homo sapiens	VYATTKTNVS	SBNAMAATRB	SELEX Yin et al.(2017) SOX3_FL_HT-SELEX	0.704	0.855
Sox3 M08168_2.00	Mus musculus	CCTTTGTYYB	VRRACAAAGG	ChIP-seq Mathelier et al.(2014) MA0514.1	0.704	0.855
SOX3 M09391_2.00	Homo sapiens	BYCWTTGTBYB	VRVACAAWGRV	Misc Kulakovskiy et al.(2013) SOX3_HUMAN.H11MO.0.B	0.704	0.855
Sox3 M09405_2.00	Mus musculus	VRVACAAWGGV	BCCWTTGTBYB	Misc Kulakovskiy et al.(2013) SOX3_MOUSE.H11MO.0.C	0.704	0.855
Sox3 M09639_2.00	Mus musculus	VACAAWRG	CYWTTGTB	Misc Heinz et al.(2010) NPC-Sox3_GSE33059	0.704	0.855
SOX3 M05770_2.00	Homo sapiens	BYATTGTBNN	NNVACAATRV	SELEX Yin et al.(2017) SOX3_FL_Methyl-HT-SELEX	0.704	0.855
Sox14 M00829_2.00	Mus musculus	NAACAATD	HATTGTTN	PBM Weirauch et al.(2013) pTH2677	0.698	0.855
Sox14 M00206_2.00	Mus musculus	NNNABAAW	WTTVTNNN	PBM Badis et al.(2009) Sox14_2677	0.698	0.855
SOX14 M03513_2.00	Homo sapiens	ACAMTAMCATTG	CAATGKTAKTGT	SELEX Jolma et al.(2013) SOX14_1	0.698	0.855
SOX14 M03514_2.00	Homo sapiens	NTGAATANCATTCAN	NTGAATGNTATTCAN	SELEX Jolma et al.(2013) SOX14_2	0.698	0.855
SOX14 M03515_2.00	Homo sapiens	TCAATWVCATTGA	TCAATGBWATTGA	SELEX Jolma et al.(2013) SOX14_3	0.698	0.855
SOX14 M05783_2.00	Homo sapiens	NYATTGWNNN	NNNWCAATRN	SELEX Yin et al.(2017) SOX14_eDBD_HT-SELEX	0.698	0.855
SOX14 M05785_2.00	Homo sapiens	NCGAACAATK	MATTGTTCGN	SELEX Yin et al.(2017) SOX14_FL_HT-SELEX	0.698	0.855
SOX14 M05784_2.00	Homo sapiens	NYATTGTNNN	NNNACAATRN	SELEX Yin et al.(2017) SOX14_eDBD_Methyl-HT-SELEX	0.698	0.855
SOX14 M05786_2.00	Homo sapiens	NATTGTTYGB	VCRAACAATN	SELEX Yin et al.(2017) SOX14_FL_Methyl-HT-SELEX	0.698	0.855
SoxN M03976_2.00	Drosophila melanogaster	VYGHACARTNN	NNAYTGTDCRB	SELEX Nitta et al.(2015) SoxN_1	0.693	0.826
SoxN M03977_2.00	Drosophila melanogaster	NCAATNVCATTGN	NCAATGBNATTGN	SELEX Nitta et al.(2015) SoxN_2	0.693	0.826
D M03969_2.00	Drosophila melanogaster	AMVGAACAAT	ATTGTTCBKT	SELEX Nitta et al.(2015) D_1	0.681	0.812
D M03970_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) D_2	0.681	0.812
D M06559_2.00	Drosophila melanogaster	BCYWTTGTTNT	ANAACAAWRGV	B1H Mathelier et al.(2014) MA0445.1	0.681	0.812
D M06448_2.00	Drosophila melanogaster	BCYATTGTYNW	WNRACAATRGV	B1H Zhu et al.(2011) D_NAR_FBgn0000411	0.681	0.812
D M09694_2.00	Drosophila melanogaster	RACAAWRGVH	DBCYWTTGTY	Misc Kulakovskiy et al.(2009) D	0.681	0.812
SOX21 M03497_2.00	Homo sapiens	AACAATKKYAKTGTT	AACAMTRMMATTGTT	SELEX Jolma et al.(2013) SOX21_1	0.675	0.855
SOX21 M03498_2.00	Homo sapiens	AACAATRKDYAKTGTT	AACAMTRHMYATTGTT	SELEX Jolma et al.(2013) SOX21_2	0.675	0.855
SOX21 M03499_2.00	Homo sapiens	TCAATGDYAKTGA	TCAMTRHCATTGA	SELEX Jolma et al.(2013) SOX21_3	0.675	0.855
SOX21 M03500_2.00	Homo sapiens	TGAATGKYAKTCA	TGAMTRMCATTCA	SELEX Jolma et al.(2013) SOX21_4	0.675	0.855
Sox21b M03983_2.00	Drosophila melanogaster	NAACAMTWNCAKTGTTB	VAACAMTGNWAKTGTTN	SELEX Nitta et al.(2015) Sox21b_1	0.660	0.841
SOX15 M03508_2.00	Homo sapiens	AACAATAMCATTGTT	AACAATGKTATTGTT	SELEX Jolma et al.(2013) SOX15_1	0.653	0.768
SOX15 M03509_2.00	Homo sapiens	ATCAATAMCATTGAT	ATCAATGKTATTGAT	SELEX Jolma et al.(2013) SOX15_2	0.653	0.768
SOX15 M03510_2.00	Homo sapiens	ATGAATAACATTCAT	ATGAATGTTATTCAT	SELEX Jolma et al.(2013) SOX15_3	0.653	0.768
SOX15 M05893_2.00	Homo sapiens	YYWTTGTNHN	NDNACAAWRR	SMiLE-seq Isakova et al.(2017) SOX15	0.653	0.768
SOX15 M11308_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX15_Q3	0.653	0.768
Sox15 M00202_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox15_3457	0.653	0.739
Sry M00211_2.00	Mus musculus	ATTRTNNNNN	NNNNNAYAAT	PBM Badis et al.(2009) Sry_2833	0.648	0.652
Sry M09408_2.00	Mus musculus	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_MOUSE.H11MO.0.B	0.648	0.652
SRY M03525_2.00	Homo sapiens	AACAATANCATTGTT	AACAATGNTATTGTT	SELEX Jolma et al.(2013) SRY_1	0.624	0.681
SRY M03526_2.00	Homo sapiens	AACAATHHNCATTGTT	AACAATGNDDATTGTT	SELEX Jolma et al.(2013) SRY_2	0.624	0.681
SRY M03527_2.00	Homo sapiens	TCAATAMCATTGA	TCAATGKTATTGA	SELEX Jolma et al.(2013) SRY_3	0.624	0.681
SRY M03528_2.00	Homo sapiens	TGAATANCATTCA	TGAATGNTATTCA	SELEX Jolma et al.(2013) SRY_4	0.624	0.681
SRY M05898_2.00	Homo sapiens	NACAATNV	BNATTGTN	SMiLE-seq Isakova et al.(2017) SRY	0.624	0.681
SRY M02717_2.00	Homo sapiens	NDWAACAAW	WTTGTWWHN	SELEX Mathelier et al.(2014) MA0084.1	0.624	0.681
SRY M09398_2.00	Homo sapiens	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_HUMAN.H11MO.0.B	0.624	0.681
SRY M11331_2.00	Homo sapiens	AAWSWMM	KKWSWTT	Transfac Matys et al.(2006) V$SRY_01	0.624	0.681
SRY M11332_2.00	Homo sapiens	HBHWTTGTTWDN	NHWAACAAWDVD	Transfac Matys et al.(2006) V$SRY_02	0.624	0.681
SRY M11333_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRY_Q6	0.624	0.681
Sox17 M00199_2.00	Mus musculus	NNNNWSAAT	ATTSWNNNN	PBM Badis et al.(2009) Sox17_2837	0.608	0.594
Sox17 M03533_2.00	Mus musculus	AACAATWDCATTGTT	AACAATGHWATTGTT	SELEX Jolma et al.(2013) Sox17_1	0.608	0.594
Sox17 M03534_2.00	Mus musculus	ATGAATWNCATTCAT	ATGAATGNWATTCAT	SELEX Jolma et al.(2013) Sox17_2	0.608	0.594
SOX17 M05896_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX17	0.608	0.594
Sox17 M02718_2.00	Mus musculus	SACAATRNN	NNYATTGTS	SELEX Mathelier et al.(2014) MA0078.1	0.608	0.594
Sox17 M08040_2.00	Mus musculus	RVACAAWRRVN	NBYYWTTGTBY	ChIP-seq Chen et al.(2011) GSE19026_Sox17_XENcells	0.608	0.594
SOX17 M09396_2.00	Homo sapiens	BCCATTKTNBN	NVNAMAATGGV	Misc Kulakovskiy et al.(2013) SOX17_HUMAN.H11MO.0.C	0.608	0.594
SOX17 M11323_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_01	0.608	0.594
SOX17 M11324_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_Q2	0.608	0.594
Sox7 M00209_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox7_3460	0.608	0.536
SOX7 M03516_2.00	Homo sapiens	AACAATRDNHAKTGTT	AACAMTDNHYATTGTT	SELEX Jolma et al.(2013) SOX7_1	0.608	0.536
SOX7 M03517_2.00	Homo sapiens	DAACAATKDYAKTGTTN	NAACAMTRHMATTGTTH	SELEX Jolma et al.(2013) SOX7_2	0.608	0.536
SOX7 M03518_2.00	Homo sapiens	NATGAATKDCAKTCATN	NATGAMTGHMATTCATN	SELEX Jolma et al.(2013) SOX7_3	0.608	0.536
SOX7 M05787_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_HT-SELEX	0.608	0.536
SOX7 M11325_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX7_Q2	0.608	0.536
SOX7 M05788_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_Methyl-HT-SELEX	0.608	0.536
Sox18 M00204_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox18_3506	0.602	0.551
SOX18 M03529_2.00	Homo sapiens	AACAATDNCATTGTT	AACAATGNHATTGTT	SELEX Jolma et al.(2013) SOX18_1	0.602	0.551
SOX18 M03530_2.00	Homo sapiens	ATCAATWDCATTGAT	ATCAATGHWATTGAT	SELEX Jolma et al.(2013) SOX18_2	0.602	0.551
SOX18 M03531_2.00	Homo sapiens	ATGAATWYCATTCAT	ATGAATGRWATTCAT	SELEX Jolma et al.(2013) SOX18_3	0.602	0.551
SOX18 M05791_2.00	Homo sapiens	VACRAYGV	BCRTYGTB	SELEX Yin et al.(2017) SOX18_eDBD_HT-SELEX	0.602	0.551
SOX18 M11334_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5_01	0.602	0.551
SOX18 M11335_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5	0.602	0.551
SOX18 M05792_2.00	Homo sapiens	BYATTGTN	NACAATRV	SELEX Yin et al.(2017) SOX18_eDBD_Methyl-HT-SELEX	0.602	0.551
Sox14 M03971_2.00	Drosophila melanogaster	BTGTWCGGTR	YACCGWACAV	SELEX Nitta et al.(2015) Sox14_1	0.595	0.594
Sox14 M03972_2.00	Drosophila melanogaster	VACAATDNCATTGTB	VACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox14_2	0.595	0.594
Sox14 M06449_2.00	Drosophila melanogaster	VYYCTTTGTYC	GRACAAAGRRB	B1H Zhu et al.(2011) Sox14_SANGER_10_FBgn0005612	0.595	0.594
Sox5 M00203_2.00	Mus musculus	ATTGTBNN	NNVACAAT	PBM Badis et al.(2009) Sox5_3459	0.585	0.580
Sox13 M00212_2.00	Mus musculus	RAACAATW	WATTGTTY	PBM Badis et al.(2009) Sox13_1718	0.585	0.580
SOX5 M05894_2.00	Homo sapiens	DVACAATRVN	NBYATTGTBH	SMiLE-seq Isakova et al.(2017) SOX5	0.585	0.580
Sox5 M02719_2.00	Mus musculus	NAACAAT	ATTGTTN	SELEX Mathelier et al.(2014) MA0087.1	0.585	0.580
SOX13 M08166_2.00	Homo sapiens	NNACAATGVNN	NNBCATTGTNN	ChIP-seq Mathelier et al.(2014) MA1120.1	0.585	0.580
SOX5 M09390_2.00	Homo sapiens	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_HUMAN.H11MO.0.C	0.585	0.580
Sox5 M09404_2.00	Mus musculus	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_MOUSE.H11MO.0.C	0.585	0.580
SOX5 M11309_2.00	Homo sapiens	NNAACAATNN	NNATTGTTNN	Transfac Matys et al.(2006) V$SOX5_01	0.585	0.580
SOX5 M11310_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX5_Q5	0.585	0.580
Sox8 M00197_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox8_1733	0.581	0.594
Sox10 M00826_2.00	Mus musculus	NNNNWBAAT	ATTVWNNNN	PBM Weirauch et al.(2013) pTH1729	0.581	0.594
SOX10 M03491_2.00	Homo sapiens	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) SOX10_1	0.581	0.594
SOX10 M03492_2.00	Homo sapiens	AACAATRTKCAGTGTT	AACACTGMAYATTGTT	SELEX Jolma et al.(2013) SOX10_2	0.581	0.594
SOX10 M03493_2.00	Homo sapiens	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) SOX10_3	0.581	0.594
SOX10 M03494_2.00	Homo sapiens	ATGAATTKCAGTCAT	ATGACTGMAATTCAT	SELEX Jolma et al.(2013) SOX10_4	0.581	0.594
SOX10 M03495_2.00	Homo sapiens	TGAATGTKCAGTCA	TGACTGMACATTCA	SELEX Jolma et al.(2013) SOX10_5	0.581	0.594
SOX8 M03483_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX8_1	0.581	0.594
SOX8 M03484_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_2	0.581	0.594
SOX8 M03485_2.00	Homo sapiens	RAACAATTKCAGTGTTN	NAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX8_3	0.581	0.594
SOX8 M03486_2.00	Homo sapiens	HATCAATTKCAGTGATN	NATCACTGMAATTGATD	SELEX Jolma et al.(2013) SOX8_4	0.581	0.594
SOX8 M03487_2.00	Homo sapiens	TGAATRTKCAGTCA	TGACTGMAYATTCA	SELEX Jolma et al.(2013) SOX8_5	0.581	0.594
SOX8 M03488_2.00	Homo sapiens	AACAATTDCAGTGTT	AACACTGHAATTGTT	SELEX Jolma et al.(2013) SOX8_6	0.581	0.594
SOX8 M03489_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_7	0.581	0.594
SOX8 M03490_2.00	Homo sapiens	MATCAATTGCAGTGATK	MATCACTGCAATTGATK	SELEX Jolma et al.(2013) SOX8_8	0.581	0.594
SOX9 M03501_2.00	Homo sapiens	DDACAATRV	BYATTGTHH	SELEX Jolma et al.(2013) SOX9_1	0.581	0.594
SOX9 M03502_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX9_2	0.581	0.594
SOX9 M03503_2.00	Homo sapiens	ATCAATRTKCAGTGAT	ATCACTGMAYATTGAT	SELEX Jolma et al.(2013) SOX9_3	0.581	0.594
SOX9 M03504_2.00	Homo sapiens	ATGAATRTKCAGTCAT	ATGACTGMAYATTCAT	SELEX Jolma et al.(2013) SOX9_4	0.581	0.594
SOX9 M03505_2.00	Homo sapiens	RAACAATTKCAGTGTTH	DAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX9_5	0.581	0.594
SOX9 M03506_2.00	Homo sapiens	NATCAATKKYAGTGATN	NATCACTRMMATTGATN	SELEX Jolma et al.(2013) SOX9_6	0.581	0.594
SOX9 M03507_2.00	Homo sapiens	NATGAATTKCAGTCATN	NATGACTGMAATTCATN	SELEX Jolma et al.(2013) SOX9_7	0.581	0.594
Sox10 M03535_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox10_1	0.581	0.594
Sox10 M03536_2.00	Mus musculus	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) Sox10_2	0.581	0.594
Sox10 M03537_2.00	Mus musculus	ATGAATTDCAGTCAT	ATGACTGHAATTCAT	SELEX Jolma et al.(2013) Sox10_3	0.581	0.594
SOX10 M05759_2.00	Homo sapiens	AACAATRNNNYATTGTT	AACAATRNNNYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_HT-SELEX	0.581	0.594
SOX10 M05761_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_HT-SELEX	0.581	0.594
SOX8 M05749_2.00	Homo sapiens	NDAACAATRV	BYATTGTTHN	SELEX Yin et al.(2017) SOX8_eDBD_HT-SELEX	0.581	0.594
SOX8 M05751_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_HT-SELEX	0.581	0.594
SOX9 M05767_2.00	Homo sapiens	HDAACAATRV	BYATTGTTHD	SELEX Yin et al.(2017) SOX9_eDBD_HT-SELEX	0.581	0.594
SOX10 M05891_2.00	Homo sapiens	BBCWWTGTTH	DAACAWWGVV	SMiLE-seq Isakova et al.(2017) SOX10	0.581	0.594
SOX9 M02716_2.00	Homo sapiens	DAACAATRG	CYATTGTTH	SELEX Mathelier et al.(2014) MA0077.1	0.581	0.594
SOX10 M08165_2.00	Homo sapiens	NNVACAAAGVN	NBCTTTGTBNN	ChIP-seq Mathelier et al.(2014) MA0442.2	0.581	0.594
SOX10 M09387_2.00	Homo sapiens	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_HUMAN.H11MO.0.B	0.581	0.594
SOX9 M09389_2.00	Homo sapiens	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_HUMAN.H11MO.0.B	0.581	0.594
Sox10 M09403_2.00	Mus musculus	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_MOUSE.H11MO.0.B	0.581	0.594
Sox9 M09399_2.00	Mus musculus	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_MOUSE.H11MO.0.A	0.581	0.594
SOX10 M11296_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q3	0.581	0.594
SOX10 M11297_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6_01	0.581	0.594
SOX10 M11298_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6	0.581	0.594
SOX9 M11304_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_09	0.581	0.594
SOX9 M11305_2.00	Homo sapiens	NNNDAACAATRRNN	NNYYATTGTTHNNN	Transfac Matys et al.(2006) V$SOX9_B1	0.581	0.594
SOX9 M11306_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q4	0.581	0.594
SOX9 M11307_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q5	0.581	0.594
SOX10 M05760_2.00	Homo sapiens	AACAATRSNSYATTGTT	AACAATRSNSYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_Methyl-HT-SELEX	0.581	0.594
SOX10 M05762_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_Methyl-HT-SELEX	0.581	0.594
SOX8 M05750_2.00	Homo sapiens	BYATTGTTNN	NNAACAATRV	SELEX Yin et al.(2017) SOX8_eDBD_Methyl-HT-SELEX	0.581	0.594
SOX8 M05752_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_Methyl-HT-SELEX	0.581	0.594
SOX9 M05768_2.00	Homo sapiens	NNNACAATRS	SYATTGTNNN	SELEX Yin et al.(2017) SOX9_eDBD_Methyl-HT-SELEX	0.581	0.594
Sox6 M00828_2.00	Mus musculus	WTTGTNNNN	NNNNACAAW	PBM Weirauch et al.(2013) pTH3862	0.578	0.551
SOX6 M05892_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX6	0.578	0.551
Sox6 M08169_2.00	Mus musculus	BCWTTGTYYY	RRRACAAWGV	ChIP-seq Mathelier et al.(2014) MA0515.1	0.578	0.551
Sox6 M09640_2.00	Mus musculus	BHWTTGTBNN	NNVACAAWDV	Misc Heinz et al.(2010) Myotubes-Sox6_GSE32627	0.578	0.551
SOX6 M11300_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX6_Q5	0.578	0.551
sem-2 M02488_2.00	Caenorhabditis elegans	NNNHVNNNNN	NNNNNBDNNN	PBM Weirauch et al.(2014) pTH9043	0.575	0.638
Sox15 M03973_2.00	Drosophila melanogaster	WYTGTTCGGTD	HACCGAACARW	SELEX Nitta et al.(2015) Sox15_1	0.575	0.551
Sox15 M03974_2.00	Drosophila melanogaster	VACAATDNCATTGTN	NACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox15_2	0.575	0.551
Sox15 M06450_2.00	Drosophila melanogaster	RWACAATR	YATTGTWY	B1H Zhu et al.(2011) Sox15_SANGER_5_FBgn0005613	0.575	0.551
egl-13 M00710_2.00	Caenorhabditis elegans	NNAACAATWN	NWATTGTTNN	PBM Narasimhan et al.(2015) pTH9125	0.572	0.580
Sox102F M03981_2.00	Drosophila melanogaster	ATTGTTCGGTGKN	NMCACCGAACAAT	SELEX Nitta et al.(2015) Sox102F_1	0.572	0.551
Sox102F M03982_2.00	Drosophila melanogaster	NAACAATDDCATTGTTN	NAACAATGHHATTGTTN	SELEX Nitta et al.(2015) Sox102F_2	0.572	0.551
Sox11 M00210_2.00	Mus musculus	WTTGTBNNN	NNNVACAAW	PBM Badis et al.(2009) Sox11_2266	0.568	0.667
Sox11 M03541_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox11_1	0.568	0.667
SOX11 M11326_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX11_Q6	0.568	0.667
SOX4 M01026_2.00	Homo sapiens	AACAAWGR	YCWTTGTT	PBM Scharer et al.(2009) Sox4	0.568	0.638
Sox4 M00213_2.00	Mus musculus	NNVACAAWD	HWTTGTBNN	PBM Badis et al.(2009) Sox4_2941	0.568	0.638
SOX4 M03496_2.00	Homo sapiens	NAACAATTKCAGTGTT	AACACTGMAATTGTTN	SELEX Jolma et al.(2013) SOX4_1	0.568	0.638
SOX4 M05765_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_HT-SELEX	0.568	0.638
SOX4 M09388_2.00	Homo sapiens	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_HUMAN.H11MO.0.B	0.568	0.638
Sox4 M09410_2.00	Mus musculus	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_MOUSE.H11MO.0.A	0.568	0.638
Sox4 M09641_2.00	Mus musculus	BCWTTGTYCN	NGRACAAWGV	Misc Heinz et al.(2010) proB-Sox4_GSE50066	0.568	0.638
SOX4 M11301_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q3	0.568	0.638
SOX4 M11302_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5_02	0.568	0.638
SOX4 M11303_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5	0.568	0.638
SOX4 M05766_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_Methyl-HT-SELEX	0.568	0.638
Sox12 M00205_2.00	Mus musculus	HWTTGTBNNN	NNNVACAAWD	PBM Badis et al.(2009) Sox12_3957	0.566	0.623
SOX12 M05789_2.00	Homo sapiens	NATTGTTCGGK	MCCGAACAATN	SELEX Yin et al.(2017) SOX12_eDBD_HT-SELEX	0.566	0.623
SOX12 M05790_2.00	Homo sapiens	YATTGTTCBKT	AMVGAACAATR	SELEX Yin et al.(2017) SOX12_eDBD_Methyl-HT-SELEX	0.566	0.623
Sox30 M00201_2.00	Mus musculus	ATTRTBNNNN	NNNNVAYAAT	PBM Badis et al.(2009) Sox30_2781	0.531	0.478
SOX30 M05753_2.00	Homo sapiens	NRACAATN	NATTGTYN	SELEX Yin et al.(2017) SOX30_eDBD_HT-SELEX	0.531	0.478
SOX30 M05754_2.00	Homo sapiens	BATTGTYN	NRACAATV	SELEX Yin et al.(2017) SOX30_eDBD_Methyl-HT-SELEX	0.531	0.478
ROX1 M00070_2.00	Saccharomyces cerevisiae	NRAACAATWNN	NNWATTGTTYN	PBM Badis et al.(2008) ROX1_2099	0.489	0.348
ROX1 M07498_2.00	Saccharomyces cerevisiae	YYHATTGTTYTS	SARAACAATDRR	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0371.1	0.489	0.348
ROX1 M08607_2.00	Saccharomyces cerevisiae	BYATTGTN	NACAATRV	Misc DeBoer et al.(2011) YPR065W_1396	0.489	0.348
ROX1 M11346_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6_01	0.489	0.348
ROX1 M11347_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6	0.489	0.348
mat1-Mc M11340_2.00	Schizosaccharomyces pombe	NRMNNAACAAAGAVRYMW	AKRYBTCTTTGTTNNKYN	Transfac Matys et al.(2006) F$MAT1MC_01	0.425	0.275
mat1-Mc M11341_2.00	Schizosaccharomyces pombe	YYHATTGTYD	HRACAATDRR	Transfac Matys et al.(2006) F$MAT1MC_02	0.425	0.275
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ML047927a-PA	Sox	64	132	IKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGMDWKMLTEDEKKPFIEEAKRLRALHMKEFPDYK

Links
Other Sox family TFs
Other *Mnemiopsis leidyi* TFs

2137 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00070p00188780	Amborella trichopoda	AMTR_s00070p00188780	I
AMTR_s00041p00193340	Amborella trichopoda	AMTR_s00041p00193340	I
bHLH121	Arabidopsis lyrata	fgenesh2_kg.3__2204__AT3G19860.1	I
BHLH121	Arabidopsis thaliana	AT3G19860	I
Bostr.19424s0675	Boechera stricta	Bostr.19424s0675	I
BRADI3G11520	Brachypodium distachyon	BRADI3G11520	I
PK18401.1	Cannabis sativa	PK18401.1	D
Cagra.0316s0082	Capsella grandiflora	Cagra.0316s0082	I
evm.TU.supercontig_6.255	Carica papaya	evm.TU.supercontig_6.255	I
Cla014511	Citrullus lanatus	Cla014511	I
Ciclev10028783m.g	Citrus clementina	Ciclev10028783m.g	I
orange1.1g022288m.g	Citrus sinensis	orange1.1g022288m.g	I
Cucsa.043580	Cucumis sativus	Cucsa.043580	I
Cucsa.169240	Cucumis sativus	Cucsa.169240	I
Eucgr.I02346	Eucalyptus grandis	Eucgr.I02346	I
Eucgr.G01757	Eucalyptus grandis	Eucgr.G01757	I
Thhalv10021271m.g	Eutrema salsugineum	Thhalv10021271m.g	I
Thhalv10023630m.g	Eutrema salsugineum	Thhalv10023630m.g	I
gene14608-v1.0-hybrid	Fragaria vesca	gene14608-v1.0-hybrid	I
gene07391-v1.0-hybrid	Fragaria vesca	gene07391-v1.0-hybrid	I
GLYMA07G26910	Glycine max	GLYMA07G26910	I
GLYMA08G15740	Glycine max	GLYMA08G15740	I
GLYMA15G29630	Glycine max	GLYMA15G29630	I
GLYMA12G02740	Glycine max	GLYMA12G02740	I
Gorai.005G252200	Gossypium raimondii	Gorai.005G252200	I
LPERR02G12290	Leersia perrieri	LPERR02G12290	I
Lus10028456.g	Linum usitatissimum	Lus10028456.g	I
Lus10041908.g	Linum usitatissimum	Lus10041908.g	I
MDP0000275844	Malus domestica	MDP0000275844	I
cassava24936.valid.m1	Manihot esculenta	cassava24936.valid.m1	I
cassava24935.valid.m1	Manihot esculenta	cassava24935.valid.m1	I
MTR_4g075480	Medicago truncatula	MTR_4g075480	I
mgf017107m	Mimulus guttatus	mgf017107m	I
GSMUA_Achr11G16630_001	Musa acuminata	GSMUA_Achr11G16630_001	I
OB0197G10010	Oryza brachyantha	OB0197G10010	I
BGIOSGA008112	Oryza indica	BGIOSGA008112	I
OPUNC02G13570	Oryza punctata	OPUNC02G13570	I
OS02G0433600	Oryza sativa	OS02G0433600	I
Pavir.Ab01730	Panicum virgatum	Pavir.Ab01730	I
Pavir.Aa02015	Panicum virgatum	Pavir.Aa02015	I
estExt_fgenesh1_pg.C_1360017	Physcomitrella patens	estExt_fgenesh1_pg.C_1360017	I
fgenesh1_pg.scaffold_31000088	Physcomitrella patens	fgenesh1_pg.scaffold_31000088	I
POPTR_0004s17540	Populus trichocarpa	POPTR_0004s17540	I
POPTR_0005s11550	Populus trichocarpa	POPTR_0005s11550	I
POPTR_0009s13220	Populus trichocarpa	POPTR_0009s13220	I
Pm026758	Prunus mume	Pm026758	I
Pm021043	Prunus mume	Pm021043	I
PRUPE_ppa008347mg	Prunus persica	PRUPE_ppa008347mg	I
PRUPE_ppa008596mg	Prunus persica	PRUPE_ppa008596mg	I
29711.m000322	Ricinus communis	29711.m000322	I
29830.m001386	Ricinus communis	29830.m001386	I
SapurV1A.0117s0370	Salix purpurea	SapurV1A.0117s0370	I
SapurV1A.1150s0140	Salix purpurea	SapurV1A.1150s0140	I
Si017804m.g	Setaria italica	Si017804m.g	I
Solyc01g111130.2	Solanum lycopersicum	Solyc01g111130.2	I
PGSC0003DMG400001594	Solanum tuberosum	PGSC0003DMG400001594	I
Sb03g028030	Sorghum bicolor	Sb03g028030	I
TCM_000204	Theobroma cacao	TCM_000204	I
TCM_006692	Theobroma cacao	TCM_006692	I
bHLH121	Vitis vinifera	VIT_03s0038g01790	I
bHLH11	Vitis vinifera	VIT_04s0023g03430	I
GRMZM2G114444	Zea mays	GRMZM2G114444	I

ML047927a (Mnemiopsis leidyi) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2137 Related TFs

ML047927a **(Mnemiopsis leidyi)
Sox**