CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TPHA_0P00560
(
Tetrapisispora phaffii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
TPHA_0P00560
T332969_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NHP10
M00068_2.00
Saccharomyces cerevisiae
TCCCCGGC
GCCGGGGA
PBM
Badis et al.(2008)
NHP10_2069
0.563
0.662
NHP10
M07496_2.00
Saccharomyces cerevisiae
YCCCCGGY
RCCGGGGR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1
0.563
0.662
NHP10
M08604_2.00
Saccharomyces cerevisiae
TCCCCGGY
RCCGGGGA
Misc
DeBoer et al.(2011)
YDL002C_502
0.563
0.662
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCE66214
Sox
94
158
PKRPTNAYLLFCEVTKEKIREAGTQDVTKGLAEAWKKLNEEDRKPFYKMYNDDRERYKKEMDEYM
Links
Other
Sox
family TFs
Other
Tetrapisispora phaffii
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI009986
Acyrthosiphon pisum
ACYPI009986
N
AAEL000715
Aedes aegypti
AAEL000715
N
AATE008001
Anopheles atroparvus
AATE008001
N
AATE011426
Anopheles atroparvus
AATE011426
N
ACOM032376
Anopheles coluzzii
ACOM032376
N
ACOM032384
Anopheles coluzzii
ACOM032384
N
ADAC007686
Anopheles darlingi
ADAC007686
N
AFAF002381
Anopheles farauti
AFAF002381
N
AFAF004796
Anopheles farauti
AFAF004796
N
AFUN005270
Anopheles funestus
AFUN005270
N
AMEM011452
Anopheles merus
AMEM011452
N
ASIS018086
Anopheles sinensis
ASIS018086
N
CPIJ004384
Culex quinquefasciatus
CPIJ004384
N
DAPPUDRAFT_16725
Daphnia pulex
DAPPUDRAFT_16725
N
DAPPUDRAFT_44266
Daphnia pulex
DAPPUDRAFT_44266
N
PHUM590440
Pediculus humanus
PHUM590440
N
tetur03g05600
Tetranychus urticae
tetur03g05600
N
TC011610
Tribolium castaneum
TC011610
N